[Chimera-users] (no subject)

Eric Pettersen pett at cgl.ucsf.edu
Thu Jul 14 13:43:09 PDT 2011


Hi Efrat,
	If you know how to read Python code, the Chimera code that writes DMS  
files is in <your Chimera installation>/share/WriteDMS/__init__.py (on  
Mac:  Chimera.app/Contents/Resources/share/WriteDMS/__init__.py).  The  
code is relatively short (about a page).

--Eric

                         Eric Pettersen
                         UCSF Computer Graphics Lab
                         http://www.cgl.ucsf.edu

On Jul 14, 2011, at 1:29 PM, Elaine Meng wrote:

> Hi Efrat,
> Just open the dms file in a text-editor and count the columns. (I'm  
> not a programmer and don't know where in the code to look for the  
> output format statement.  Also, counting is not that hard!)
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
>
> On Jul 14, 2011, at 1:21 PM, efratk at techunix.technion.ac.il wrote:
>
>> Hello,
>> There was a problem with my mail server and I wasn't sure the mail  
>> was sent OK.
>> Sorry for that.
>> Regarding your answer: What I want to know is in which column  
>> number each field
>> (in the DMS output format) starts and in which column number it ends.
>>
>> Thanks in advance,
>> Efrat
>>
>> Quoting Elaine Meng <meng at cgl.ucsf.edu>:
>>
>>> Hello,
>>> This was answered yesterday:
>>>
>>> <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-July/006552.html 
>>> >
>>>
>>> Please don't send the same question several times -- thanks,
>>> Elaine
>>>
>>> On Jul 14, 2011, at 11:16 AM, efratk at techunix.technion.ac.il wrote:
>>>
>>>>
>>>> Hello,
>>>>
>>>> I am a Phd student at the Technion, I use the program- DMS and I  
>>>> would like
>>> to
>>>> know what is the numeration of the columns of the first six  
>>>> fields in the
>>>> output format of the dms.
>>>>
>>>> Thanks in advance,
>>>> Efrat
>>>
>>>
>>
>>
>> _______________________________________________
>> Chimera-users mailing list
>> Chimera-users at cgl.ucsf.edu
>> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>
>
> _______________________________________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users





-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20110714/10ab3614/attachment.html>


More information about the Chimera-users mailing list