<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Efrat,<div><span class="Apple-tab-span" style="white-space:pre"> </span>If you know how to read Python code, the Chimera code that writes DMS files is in <your Chimera installation>/share/WriteDMS/__init__.py (on Mac: Chimera.app/Contents/Resources/share/WriteDMS/__init__.py). The code is relatively short (about a page).</div><div><br></div><div>--Eric</div><div><br></div><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> Eric Pettersen</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> UCSF Computer Graphics Lab</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></div><div><div><br></div><div> On Jul 14, 2011, at 1:29 PM, Elaine Meng wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi Efrat,<br>Just open the dms file in a text-editor and count the columns. (I'm not a programmer and don't know where in the code to look for the output format statement. Also, counting is not that hard!)<br>Elaine<br>-----<br>Elaine C. Meng, Ph.D. <br>UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab<br>Department of Pharmaceutical Chemistry<br>University of California, San Francisco<br><br><br><br>On Jul 14, 2011, at 1:21 PM, <a href="mailto:efratk@techunix.technion.ac.il">efratk@techunix.technion.ac.il</a> wrote:<br><br><blockquote type="cite">Hello,<br></blockquote><blockquote type="cite">There was a problem with my mail server and I wasn't sure the mail was sent OK.<br></blockquote><blockquote type="cite">Sorry for that.<br></blockquote><blockquote type="cite">Regarding your answer: What I want to know is in which column number each field<br></blockquote><blockquote type="cite">(in the DMS output format) starts and in which column number it ends.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Thanks in advance,<br></blockquote><blockquote type="cite">Efrat<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Quoting Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu">meng@cgl.ucsf.edu</a>>:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><blockquote type="cite">Hello, <br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">This was answered yesterday:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><<a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-July/006552.html">http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-July/006552.html</a>><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Please don't send the same question several times -- thanks,<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Elaine<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">On Jul 14, 2011, at 11:16 AM, <a href="mailto:efratk@techunix.technion.ac.il">efratk@techunix.technion.ac.il</a> wrote:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Hello,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">I am a Phd student at the Technion, I use the program- DMS and I would like<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">to<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">know what is the numeration of the columns of the first six fields in the<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">output format of the dms.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Thanks in advance,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Efrat<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">Chimera-users mailing list<br></blockquote><blockquote type="cite"><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br></blockquote><blockquote type="cite"><a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br></blockquote><br><br>_______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users<br></div></blockquote></div><br></div><br><div apple-content-edited="true"><span class="Apple-style-span" style="border-collapse: separate; 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