[Chimera-users] Mutagenesis

[r charbel maroun]

Hi Elaine,

Thank you for your prompt and appropriate reply.

Cheers,

Charbel


On Wed, Sep 22, 2010 at 7:46 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi R,
> Amino acids can be mutated with command "swapaa" or the Rotamers graphical
> interface (allows interactively choosing rotamers of the same or a different
> amino acid)
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/swapaa.html>
> <
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/rotamers/rotamers.html
> >
>
> If you were searching the chimera-user at cgl.ucsf.edu archive, you could
> find a handful of relevant messages with "mutation":
> <
> http://plato.cgl.ucsf.edu/cgi-bin/swish-chimera-users.cgi?sort=swishrank&query=mutation&submit=Search+chimera-users+archive
> >
>
> If you were using the documentation search box, Rotamers and swapaa could
> be found with the term "mutated" but not mutation/mutagenesis.  There are
> various other routes through the documentation, such as from the page on
> modifying data or the structure analysis and comparison tutorial.
>
> Oh, and nucleic acids can be mutated with the command "swapna"
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/swapna.html>
>
> Best,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> On Sep 22, 2010, at 9:45 AM, r charbel maroun wrote:
>
> > Dear Chimera users,
> >
> > Please correct me if I'm wrong, but neither in Chimera nor in the user's
> list did I find any info on mutating a residue. Is this a missing
> functionality ?
> >
> > Greetings
>
>


-- 
R. Charbel MAROUN, PhD, HDR
Neurobiologie et Pharmacologie
Moléculaire
Centre de Psychiatrie et de
Neurosciences Broca-Sainte Anne
(INSERM U894)
2ter rue d'Alésia
75014 Paris
FRANCE
Tél. +33 1 40 78 92 77
Fax +33 1 45 80 72 93
e-mail rmaroun at gmail.com
          charbel.maroun at inserm.fr
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