[Chimera-users] Query regarding solvent accessible surface area of protein

Aditya Padhi adi.uoh at gmail.com
Mon Nov 1 09:43:30 PDT 2010

Dear Elaine,
        Thanks alot. I hope I can able to solve my problem now. I will try
it up.

Best of luck,

On Mon, Nov 1, 2010 at 9:35 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Aditya,
> To read in trajectory formats, you need to start MD Movie (choose Tools...
> MD/Ensemble Analysis... MD Movie).  That gives a file browser for opening
> trajectory formats.
> As you said, these formats are not in the main "File... Open" dialog.  It
> is because reading in a trajectory usually requires more than one file and
> sometimes additional user-specified parameters.
> MD Movie documentation:
> <
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/movie/framemovie.html
> >
> Best,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> On Oct 31, 2010, at 10:12 PM, Aditya Padhi wrote:
> >
> > Hi Elaine,
> >     I have tried the tools that you have mentioned in detail but I am
> getting the .crd and .parm7 file in my MD simulation. So, when I am trying
> to open these, there is no file formats of these in Chimera. Can you suggest
> any solution for it? How can Chimera can read these files.
> >     Kindly help me as I have no idea.
> > Thank you.
> > Aditya.

Aditya Kumar Padhi
Ph.D Scholar
School of Biological Sciences (SBS)
Indian Institute of Technology Delhi
New Delhi-110016, India
Contact no:+91-9711539958
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