[Chimera-users] Query regarding solvent accessible surface area of protein

Elaine Meng meng at cgl.ucsf.edu
Mon Nov 1 09:05:55 PDT 2010

Hi Aditya,
To read in trajectory formats, you need to start MD Movie (choose Tools... MD/Ensemble Analysis... MD Movie).  That gives a file browser for opening trajectory formats.

As you said, these formats are not in the main "File... Open" dialog.  It is because reading in a trajectory usually requires more than one file and sometimes additional user-specified parameters.

MD Movie documentation:

Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Oct 31, 2010, at 10:12 PM, Aditya Padhi wrote:
> Hi Elaine,
>     I have tried the tools that you have mentioned in detail but I am getting the .crd and .parm7 file in my MD simulation. So, when I am trying to open these, there is no file formats of these in Chimera. Can you suggest any solution for it? How can Chimera can read these files.
>     Kindly help me as I have no idea.
> Thank you.
> Aditya.

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