| #26961 |
Please remove my personal information from the website
|
defect
|
pett
|
2 months
|
| #26946 |
Slow startup 30 seconds on macOS 26.3
|
defect
|
goddard
|
3 months
|
| #26922 |
Check for updates: Invalid response (text/plain).
|
defect
|
gregc
|
3 months
|
| #26787 |
ChimeraX color-key export problem
|
defect
|
pett
|
7 months
|
| #26719 |
Chimera bug report submission
|
defect
|
|
9 months
|
| #26701 |
Chimera registration failure
|
defect
|
gregc
|
10 months
|
| #26700 |
Chimera bug submission blocked
|
defect
|
gregc
|
10 months
|
| #26702 |
Chimera bug report submission
|
defect
|
|
10 months
|
| #18409 |
C→N peptide bond mispositions other chains of multimer
|
defect
|
pett
|
11 months
|
| #26671 |
Web services not working
|
defect
|
gregc
|
11 months
|
| #26653 |
Testing Chimera 1.19 on Wayland Ubuntu 24.04, works
|
task
|
goddard
|
11 months
|
| #26649 |
MapQ installation
|
defect
|
pett
|
11 months
|
| #20529 |
SMILES translation failure
|
defect
|
pett
|
13 months
|
| #20447 |
PDB fetching broken
|
defect
|
pett
|
15 months
|
| #20440 |
PDB fetching broken
|
defect
|
pett
|
15 months
|
| #20389 |
getPaths() returned an empty list
|
defect
|
pett
|
16 months
|
| #20336 |
UCSF Chimera - Unable to Load .nc and .prmtop Files in MD Movie Tool After Windows Update
|
defect
|
pett
|
18 months
|
| #20232 |
Color Key tool missing _setKeyLabelSide
|
defect
|
pett
|
20 months
|
| #20209 |
Trouble saving TIFF
|
defect
|
pett
|
21 months
|
| #20204 |
Duplicate TIFF
|
defect
|
pett
|
21 months
|
| #20200 |
Cannot save preferences file
|
defect
|
pett
|
21 months
|
| #20163 |
chimera exited abnormally; the exit code was: -1073741819
|
defect
|
pett
|
23 months
|
| #20157 |
Autofocus when nothing displayed
|
defect
|
pett
|
23 months
|
| #20150 |
Animate: atom labels changing without fading not handled
|
defect
|
pett
|
23 months
|
| #20136 |
AlphaFold3 mmCIF omits ligand residue number
|
defect
|
pett
|
2 years
|
| #20056 |
AlphaFold3 mmCIF omits chain description
|
defect
|
pett
|
2 years
|
| #20027 |
surftransp missing argument raises traceback
|
defect
|
pett
|
2 years
|
| #19971 |
Blast tries to save session data
|
defect
|
pett
|
2 years
|
| #19975 |
Clicking on already-selected "alignment" radio button produces traceback
|
defect
|
pett
|
2 years
|
| #19974 |
Cannot reach USCR Chimera(X) sites
|
defect
|
pett
|
2 years
|
| #19908 |
Intersurf: invalid literal for int() with base 10: 'qhull'
|
defect
|
pett
|
2 years
|
| #19903 |
Chimera download error
|
defect
|
pett
|
2 years
|
| #19823 |
Trailing space in new folder name
|
defect
|
pett
|
2 years
|
| #19806 |
character is above the range allowed by Tcl
|
defect
|
pett
|
2 years
|
| #19788 |
Server Availability
|
defect
|
|
3 years
|
| #19707 |
Blast failure
|
defect
|
pett
|
3 years
|
| #19690 |
File character outside Tk Unicode range
|
defect
|
pett
|
3 years
|
| #18382 |
Atom typing bug
|
defect
|
pett
|
3 years
|
| #19640 |
Chimera launcher error
|
defect
|
pett
|
3 years
|
| #19617 |
Benchmark scores
|
task
|
goddard
|
3 years
|
| #19599 |
FFmpeg not installed
|
defect
|
pett
|
3 years
|
| #19589 |
Click into empty Model Panel configure pane produces traceback
|
defect
|
pett
|
3 years
|
| #19583 |
Errors encountered when using Chimera to repair protein missing residues
|
defect
|
|
3 years
|
| #19582 |
a test bug
|
defect
|
|
3 years
|
| #19557 |
Save Mol2: Operation not permitted
|
defect
|
pett
|
3 years
|
| #19524 |
Cannot find sleap executable
|
defect
|
gregc
|
3 years
|
| #19503 |
certifi missing on Linux
|
defect
|
gregc
|
3 years
|
| #19489 |
Problem opening files
|
defect
|
pett
|
3 years
|
| #19433 |
Benchmark scores
|
task
|
goddard
|
3 years
|
| #19412 |
cx_client module does not exist
|
defect
|
pett
|
3 years
|
| #19402 |
Anchor side atom not in relevant bond
|
defect
|
pett
|
3 years
|
| #19405 |
Vina: got multiple values for keyword argument 'backend'
|
defect
|
pett
|
3 years
|
| #19354 |
Unsupported Unicode character
|
defect
|
pett
|
3 years
|
| #19261 |
residue BEP atom N3 mistakenly typed as N2
|
defect
|
pett
|
3 years
|
| #19258 |
Symbol not found: _getentropy
|
defect
|
pett
|
3 years
|
| #19215 |
modeller 'server down'
|
defect
|
pett
|
4 years
|
| #19198 |
Mouse up missed
|
defect
|
pett
|
4 years
|
| #19173 |
Chimera launcher error
|
defect
|
pett
|
4 years
|
| #19083 |
Chimera launcher error
|
defect
|
pett
|
4 years
|
| #19027 |
UniProt fetch: HTTP Error 405: Not Allowed
|
defect
|
pett
|
4 years
|
| #19011 |
UniProt fetch: HTTP Error 405: Not Allowed
|
defect
|
pett
|
4 years
|
| #19014 |
UniProt fetch: HTTP Error 405: Not Allowed
|
defect
|
pett
|
4 years
|
| #18993 |
Chimera launcher error
|
defect
|
pett
|
4 years
|
| #18998 |
ChimeraX exporter: offset is tuple, not Point
|
defect
|
pett
|
4 years
|
| #18940 |
Chimera hanging
|
defect
|
pett
|
4 years
|
| #18928 |
SMILES translation failure
|
defect
|
pett
|
4 years
|
| #18941 |
File→Open: exit
|
defect
|
pett
|
4 years
|
| #17832 |
RFE: "lock" model out of next/previous sequence
|
enhancement
|
pett
|
4 years
|
| #18900 |
Chimera launcher error
|
defect
|
pett
|
4 years
|
| #18899 |
Crash
|
defect
|
pett
|
4 years
|
| #18913 |
Benchmark scores
|
task
|
goddard
|
4 years
|
| #18865 |
Problem determining mmCIF nucleic connectivity
|
defect
|
pett
|
4 years
|
| #18852 |
Multiple chain IDs in chain
|
defect
|
pett
|
4 years
|
| #18827 |
chimera exited abnormally,asking for help
|
defect
|
pett
|
4 years
|
| #18822 |
MODELLER web service down 'ERROR'.
|
defect
|
pett
|
4 years
|
| #18753 |
Benchmark scores
|
task
|
goddard
|
4 years
|
| #18728 |
Chimera launcher error
|
defect
|
pett
|
4 years
|
| #18717 |
Chimera launcher error
|
defect
|
pett
|
4 years
|
| #17974 |
Defined attribute starting with upper case not in Render By Attr's save menu
|
defect
|
pett
|
4 years
|
| #18690 |
No less-than operator for vectors
|
defect
|
pett
|
4 years
|
| #18677 |
Failure contacting SMILES server
|
defect
|
pett
|
4 years
|
| #18656 |
NetCDF: String match to name in use
|
defect
|
pett
|
4 years
|
| #18622 |
Color dragged across timeline
|
defect
|
pett
|
4 years
|
| #18584 |
Chimera launcher error
|
defect
|
pett
|
4 years
|
| #18533 |
Benchmark scores
|
task
|
goddard
|
5 years
|
| #18531 |
Tk not providing event arg
|
defect
|
pett
|
5 years
|
| #18527 |
Cannot fetch Modeller scores
|
defect
|
pett
|
5 years
|
| #18515 |
Benchmark scores
|
task
|
goddard
|
5 years
|
| #18506 |
Chimera launcher error
|
defect
|
pett
|
5 years
|
| #18452 |
Chimera launcher error
|
defect
|
pett
|
5 years
|
| #18483 |
gzip not available on Windows
|
defect
|
pett
|
5 years
|
| #18451 |
Chimera launcher error
|
defect
|
pett
|
5 years
|
| #18441 |
Vina: receptor search volume must be set
|
defect
|
pett
|
5 years
|
| #18426 |
mouse wheel scrolling: <lambda>() takes exactly 1 argument (0 given)
|
defect
|
pett
|
5 years
|
| #18410 |
Chimera error
|
defect
|
pett
|
5 years
|
| #18401 |
Cannot access chimera website
|
defect
|
pett
|
5 years
|
| #18374 |
Update EMDB web page urls
|
defect
|
goddard
|
5 years
|
| #18298 |
cannot save chimera quits
|
defect
|
pett
|
5 years
|
| #18329 |
Clustering _slow_
|
defect
|
pett
|
5 years
|
| #18174 |
opening file crashes Chimera
|
defect
|
pett
|
5 years
|
| #18107 |
Minimize: No parameters for bond
|
defect
|
pett
|
5 years
|
| #18252 |
Can't remove "skip" buttons
|
defect
|
pett
|
5 years
|
| #18226 |
Gromacs 2021
|
defect
|
pett
|
5 years
|
| #18249 |
Permission denied checking for crashes
|
defect
|
goddard
|
5 years
|
| #18236 |
Modeller unavailable
|
defect
|
pett
|
5 years
|
| #18235 |
BLAST broken
|
defect
|
pett
|
5 years
|
| #18216 |
Problem associating structure with sequence
|
defect
|
pett
|
5 years
|
| #18180 |
Web services down
|
defect
|
Scooter Morris
|
5 years
|
| #18151 |
Nucleotides: need to orthogonalize rotation
|
defect
|
gregc
|
5 years
|
| #18133 |
Reporting a bug: MD simulations
|
defect
|
pett
|
5 years
|
| #18089 |
Benchmark scores
|
task
|
goddard
|
5 years
|
| #18079 |
main menu unresponsive
|
defect
|
pett
|
5 years
|
| #18071 |
website down?
|
defect
|
pett
|
5 years
|
| #18061 |
Permission denied generating bug report
|
defect
|
goddard
|
5 years
|
| #18063 |
error downloading software
|
defect
|
pett
|
5 years
|
| #18053 |
"current" documentation going to very old version
|
defect
|
gregc
|
5 years
|
| #18027 |
Restore local web service from session: global name 'filelock' is not defined
|
defect
|
pett
|
5 years
|
| #17946 |
RMF dynamic lib not found
|
defect
|
pett
|
5 years
|
| #17950 |
Registration failure
|
defect
|
pett
|
5 years
|
| #17916 |
'mdMovieDialog' object has no attribute 'col1'
|
defect
|
pett
|
5 years
|
| #17919 |
Benchmark scores
|
task
|
goddard
|
5 years
|
| #17897 |
IDLE jams everything up
|
defect
|
pett
|
5 years
|
| #17884 |
'Open' button on dir list fails with exotic characters
|
defect
|
pett
|
5 years
|
| #17870 |
Benchmark scores
|
task
|
goddard
|
5 years
|
| #17868 |
OpenGL not found
|
defect
|
goddard
|
5 years
|
| #17863 |
Problem fetching files via SSL
|
defect
|
pett
|
5 years
|
| #17857 |
Cannot save segmentation file
|
defect
|
goddard
|
5 years
|
| #17841 |
PDB fetch broken
|
defect
|
pett
|
6 years
|
| #17672 |
Search Documention not finding lib
|
defect
|
gregc
|
6 years
|
| #17621 |
matplotlib linked against local build-machine library
|
defect
|
pett
|
6 years
|
| #16827 |
Blank buttons
|
defect
|
pett
|
6 years
|
| #17828 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17771 |
Anaglyph stereo does not work with transparent models
|
defect
|
gregc
|
6 years
|
| #17148 |
Problem with UI interaction on second display (Mac)
|
defect
|
pett
|
6 years
|
| #17592 |
Chimera on MacOs
|
defect
|
pett
|
6 years
|
| #17604 |
Crash applying rotamer
|
defect
|
pett
|
6 years
|
| #17731 |
Antechamber failure
|
defect
|
gregc
|
6 years
|
| #17741 |
Broken PDB2PQR links
|
defect
|
meng
|
6 years
|
| #17408 |
Write prmtop: executable parmchk not found
|
defect
|
pett
|
6 years
|
| #17459 |
BLAST and UniProt info PDB web services being removed November 2020
|
defect
|
pett
|
6 years
|
| #17695 |
subscription problem
|
defect
|
pett
|
6 years
|
| #17687 |
problem opening file
|
defect
|
pett
|
6 years
|
| #17670 |
Web services down
|
defect
|
pett
|
6 years
|
| #17668 |
Zero-length arrows
|
defect
|
pett
|
6 years
|
| #17662 |
No atomspec balloons
|
defect
|
pett
|
6 years
|
| #17650 |
Scrollbar problem
|
defect
|
pett
|
6 years
|
| #17643 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17637 |
Volume series not read in order
|
defect
|
goddard
|
6 years
|
| #17639 |
PubChem ID contains non-ASCII characters
|
defect
|
pett
|
6 years
|
| #17632 |
explicit specification of ff14SB forcefield not supported
|
defect
|
pett
|
6 years
|
| #17630 |
Gromacs 2020
|
defect
|
pett
|
6 years
|
| #17622 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17625 |
Configure event delivered to dead combobox
|
defect
|
pett
|
6 years
|
| #17611 |
configure event delivered to dead combobox
|
defect
|
pett
|
6 years
|
| #17610 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17615 |
Gromacs 2020
|
defect
|
pett
|
6 years
|
| #17597 |
"stop really" from thread doesn't quit
|
defect
|
pett
|
6 years
|
| #17587 |
Problem with Adjust Bond Length
|
defect
|
pett
|
6 years
|
| #17589 |
AddH adds 3 hydrogens to water oxygen
|
defect
|
pett
|
6 years
|
| #17331 |
IndexError showing sequence
|
defect
|
|
6 years
|
| #17563 |
Fw: Defining binding site
|
defect
|
pett
|
6 years
|
| #17561 |
Cannot replace preferences file
|
defect
|
Conrad Huang
|
6 years
|
| #17543 |
failed to import UserError
|
defect
|
pett
|
6 years
|
| #17524 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17527 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17520 |
swapaa forming bond to template atom
|
defect
|
|
6 years
|
| #17515 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17517 |
Testing crash report on macOS Catalina
|
task
|
goddard
|
6 years
|
| #17510 |
Web services down
|
defect
|
Conrad Huang
|
6 years
|
| #17492 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17471 |
Crash handling gesture event
|
defect
|
goddard
|
6 years
|
| #17245 |
Gromacs 2020
|
defect
|
pett
|
6 years
|
| #17313 |
FindHBond problem due to bad atom typing
|
defect
|
pett
|
6 years
|
| #17431 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17387 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17375 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17335 |
Chimera bug report submission
|
task
|
goddard
|
6 years
|
| #17310 |
Crash handling gesture event
|
defect
|
goddard
|
6 years
|
| #17256 |
AddH/ESP on split model: KeyError
|
defect
|
pett
|
6 years
|
| #17276 |
File browser blows up on extended Unicode
|
defect
|
pett
|
6 years
|
| #17262 |
Benchmark scores
|
task
|
goddard
|
6 years
|
| #17243 |
Chain-widget error when non-ASCII in name
|
defect
|
pett
|
6 years
|
| #17232 |
ModEval scores
|
defect
|
pett
|
6 years
|
| #17234 |
BLAST Database error: Error: Not a valid version 4 database
|
defect
|
Conrad Huang
|
6 years
|
| #17177 |
'Operation not permitted' produces messed up column browser
|
defect
|
pett
|
6 years
|
| #17227 |
traceback opening PDB 6ore, NameError: global name 'g' is not defined
|
defect
|
Conrad Huang
|
6 years
|
| #17224 |
Blast Protein: BLAST Database error: Error: Not a valid version 4 database
|
defect
|
Conrad Huang
|
6 years
|
| #17207 |
New folder name contains os.sep character
|
defect
|
pett
|
6 years
|
| #17200 |
Event is None
|
defect
|
pett
|
6 years
|
| #17176 |
match-align bug
|
defect
|
pett
|
6 years
|
| #17182 |
Segmentation: crash in region_maxima_py
|
defect
|
goddard
|
6 years
|
| #17147 |
Source code is no longer on Chimera wiki
|
defect
|
Conrad Huang
|
6 years
|
| #17119 |
Crash in chimera::NotifierList::addNotification
|
defect
|
goddard
|
6 years
|
| #17107 |
objects (e.g. axes or VRML) not affected by changing shininess parameters
|
defect
|
goddard
|
6 years
|
| #17090 |
Ribbon style editor: global name 'replyobj' is not defined
|
defect
|
Conrad Huang
|
7 years
|
| #17081 |
Preferences dialog not set correctly for plugin location update
|
defect
|
pett
|
7 years
|
| #17079 |
BlaST web service: No alias or index file found for protein database
|
defect
|
Conrad Huang
|
7 years
|
| #17075 |
Bond deleted in non-molecular model
|
defect
|
pett
|
7 years
|
| #17070 |
Modeller problem
|
defect
|
pett
|
7 years
|
| #17069 |
BLAST web service: No alias or index file found for protein database
|
defect
|
Conrad Huang
|
7 years
|
| #17067 |
Spaces in path names not handled correctly by antechamber
|
defect
|
pett
|
7 years
|
| #17063 |
Mac OS Catalina
|
defect
|
pett
|
7 years
|
| #17056 |
Command-line selection not working
|
defect
|
pett
|
7 years
|
| #10991 |
AddH: C3/N3+ hydorgens aligned rather than staggered
|
defect
|
pett
|
7 years
|
| #17036 |
Benchmark scores
|
task
|
goddard
|
7 years
|
| #17037 |
Benchmark scores
|
task
|
goddard
|
7 years
|
| #17031 |
FindHBond: Unexpected tau symmetry
|
defect
|
pett
|
7 years
|
| #17023 |
Download failure
|
defect
|
Conrad Huang
|
7 years
|
| #17017 |
NetCDF: No such file or directory
|
defect
|
pett
|
7 years
|
| #17003 |
Matchmaker icon
|
enhancement
|
pett
|
7 years
|
| #16998 |
Fetch UniProt: list index out of range
|
defect
|
pett
|
7 years
|
| #16978 |
Attempt to reread removed map file
|
defect
|
goddard
|
7 years
|
| #16959 |
Benchmark scores
|
task
|
goddard
|
7 years
|
| #16939 |
Autodock Vina: box is None
|
defect
|
Conrad Huang
|
7 years
|
| #16929 |
RR distance maps: distance map display missing bottom row
|
defect
|
Conrad Huang
|
7 years
|
| #16920 |
Retain unmodelled non-HET during MODELLER
|
defect
|
pett
|
7 years
|
| #16926 |
import of PDBmatrices: cannot import name space_group_matrices
|
defect
|
goddard
|
7 years
|
| #16898 |
UniProt fetch: list index out of range while mapping ID
|
defect
|
pett
|
7 years
|
| #16856 |
KeyError removing root while categorizing atoms into surface types
|
defect
|
pett
|
7 years
|
| #16873 |
Benchmark scores
|
task
|
goddard
|
7 years
|
| #16859 |
Can't reach menu bar
|
defect
|
pett
|
7 years
|
| #16852 |
PDB2PQR failure
|
defect
|
Conrad Huang
|
7 years
|
| #16832 |
Hang/crash adding multiple trajectory coordinate sets
|
defect
|
pett
|
7 years
|
| #16843 |
SMILES string contains control character
|
defect
|
pett
|
7 years
|
| #16833 |
AddH KeyError
|
defect
|
pett
|
7 years
|
| #16831 |
Benchmark scores
|
task
|
goddard
|
7 years
|
| #16784 |
Showing sequence of 5nsr, chain M: string index out of range
|
defect
|
pett
|
7 years
|
| #16821 |
Documentation typo
|
defect
|
meng
|
7 years
|
| #16806 |
Benchmark scores
|
task
|
goddard
|
7 years
|
| #16788 |
MidasError in menu alias raises traceback
|
defect
|
pett
|
7 years
|
| #16771 |
Loop modeling: 'NoneType' object has no attribute 'blocks'
|
defect
|
pett
|
7 years
|
| #16744 |
Dx Diag output
|
defect
|
gregc
|
7 years
|
| #16731 |
No such file or directory: 'chimera48.png'
|
defect
|
gregc
|
7 years
|
| #16740 |
chimera-users archive search broken
|
defect
|
Conrad Huang
|
7 years
|
| #13253 |
out of memory computing trajectory
|
defect
|
pett
|
7 years
|
| #16707 |
File browser freezes
|
defect
|
pett
|
7 years
|
| #16708 |
Next/Previous throws error when all models inactive/undisplayed
|
defect
|
pett
|
7 years
|
| #16689 |
Add "Next" button to command-line buttons
|
enhancement
|
pett
|
7 years
|
| #16703 |
'pymol' module imported
|
defect
|
pett
|
7 years
|
| #16499 |
Chimera failed abnormally
|
defect
|
gregc
|
7 years
|
| #16686 |
Benchmark scores
|
task
|
goddard
|
7 years
|
| #16675 |
Session save failure: KeyError: _molecule.PseudoBondGroup
|
defect
|
pett
|
7 years
|
| #15959 |
Better attribute-name screening; report screening in more obvious fashion
|
enhancement
|
pett
|
7 years
|
| #16650 |
MD Movie won't start
|
defect
|
pett
|
7 years
|
| #16556 |
Chimera vs fedora 29
|
defect
|
gregc
|
7 years
|
| #16639 |
Benchmark scores
|
task
|
goddard
|
7 years
|
| #16175 |
libfontconfig.so.1: undefined symbol: FT_Done_MM_Var
|
defect
|
gregc
|
7 years
|
| #16593 |
Better bulletproofing of writing session/preference files
|
defect
|
pett
|
7 years
|
| #16447 |
Mac gesture crash Tk 8.6.7
|
defect
|
pett
|
7 years
|
| #16441 |
Gesture handling crash in Tk 8.6.7
|
defect
|
pett
|
7 years
|
| #16446 |
No atomspec ballons
|
defect
|
pett
|
7 years
|
| #16519 |
Slow startup
|
defect
|
gregc
|
8 years
|
| #16528 |
Crash reading PDB file
|
defect
|
pett
|
8 years
|
| #16529 |
Crash reading PDB file
|
defect
|
pett
|
8 years
|
| #16504 |
Benchmark scores
|
enhancement
|
goddard
|
8 years
|
| #16500 |
MD crash on Mac
|
defect
|
pett
|
8 years
|
| #16438 |
MacOS Mojave button text blank
|
defect
|
pett
|
8 years
|
| #15513 |
Select-chains dialog should be scrollable
|
enhancement
|
pett
|
8 years
|
| #16478 |
movie encode "preset" option gives error
|
defect
|
goddard
|
8 years
|
| #16468 |
Morph: unopen model when showing atomspec balloon
|
defect
|
Conrad Huang
|
8 years
|
| #16449 |
Crash handling gesture event with Tk 8.6.7
|
defect
|
pett
|
8 years
|
| #16328 |
Check For Updates download link not working
|
defect
|
gregc
|
8 years
|
| #16418 |
Linux installation instructions inaccurate
|
defect
|
gregc
|
8 years
|
| #16439 |
Dunbrack 2010 library PRO rotamer: list index out of range
|
defect
|
pett
|
8 years
|
| #16432 |
FitMap: models list contains None
|
defect
|
goddard
|
8 years
|
| #16419 |
Crash fetching rescoring data
|
defect
|
pett
|
8 years
|
| #16420 |
Benchmark scores
|
task
|
goddard
|
8 years
|
| #16414 |
TypeError:<lambda>() takes at least 1 argument (0 given)
|
defect
|
pett
|
8 years
|
| #16411 |
EMDB fetch failure
|
defect
|
goddard
|
8 years
|
| #15586 |
Autodock Vina: argument 1 should be a Xform
|
defect
|
Conrad Huang
|
8 years
|
| #16398 |
Handle initial byte-order marker
|
enhancement
|
pett
|
8 years
|
| #16389 |
Amber trajectory gets pseudobonds in place of bonds
|
defect
|
pett
|
8 years
|
| #16390 |
Centering on surface: unsupported operand type(s) for *: 'NoneType' and 'float'
|
defect
|
goddard
|
8 years
|
| #16234 |
open MD movie from cryo_fit
|
defect
|
pett
|
8 years
|
| #16376 |
Problem restoring surface cap: list index out of range
|
defect
|
goddard
|
8 years
|
| #16367 |
NetCDF structure lacks inter-res connectivity
|
defect
|
pett
|
8 years
|
| #16333 |
Command line button suggestions
|
defect
|
pett
|
8 years
|
| #16361 |
AlignChains: too many values to unpack
|
defect
|
pett
|
8 years
|
| #16360 |
vop localCorrelation: arrays must be contiguous
|
defect
|
goddard
|
8 years
|
| #16337 |
Animate: each model has its own center of rotation
|
defect
|
Conrad Huang
|
8 years
|
| #16318 |
PRO rotamer in new Dunbrack lib fails
|
defect
|
pett
|
8 years
|
| #16314 |
Align Chain Sequences ValueError: too many values to unpack
|
defect
|
pett
|
8 years
|
| #16313 |
MD: 'NoneType' object has no attribute 'lower'
|
defect
|
pett
|
8 years
|
| #16284 |
KeyError: 'x' while reading small-molecule CIF
|
defect
|
Conrad Huang
|
8 years
|
| #16282 |
Benchmark scores
|
task
|
goddard
|
8 years
|
| #16280 |
result from "define axis" too short?
|
defect
|
pett
|
8 years
|
| #16281 |
Swapping PRO fails with new Dunbrack lib
|
defect
|
pett
|
8 years
|
| #16278 |
Invisible model
|
defect
|
pett
|
8 years
|
| #16276 |
KeyError (PseudobondGroup) while saving session
|
defect
|
pett
|
8 years
|
| #16256 |
Use distance criteria for bonding when CCD entry missing
|
defect
|
Conrad Huang
|
8 years
|
| #16257 |
UniProt fetch failure
|
defect
|
pett
|
8 years
|
| #16239 |
Uniprot fetch failure
|
defect
|
pett
|
8 years
|
| #16241 |
Segger: numpy array used as boolean
|
defect
|
goddard
|
8 years
|
| #16237 |
Benchmark scores
|
task
|
goddard
|
8 years
|
| #16232 |
Web service appears to be down
|
defect
|
pett
|
8 years
|
| #16037 |
Sequence names wrong when realignment in same window using MUSCLE
|
defect
|
pett
|
8 years
|
| #16218 |
Autodock Vina: argument 1 should be a Xform (plus task errors)
|
defect
|
Conrad Huang
|
8 years
|
| #16217 |
updateTaskStatus: KeyError
|
defect
|
Conrad Huang
|
8 years
|
| #16209 |
Benchmark scores
|
task
|
goddard
|
8 years
|
| #16190 |
Illegal Tk color name
|
defect
|
pett
|
8 years
|
| #16187 |
SMILES server failure
|
defect
|
pett
|
8 years
|
| #16178 |
Task reporting: unsupported operand type(s) for -: 'float' and 'NoneType'
|
defect
|
Conrad Huang
|
8 years
|
| #13774 |
replyobj.warn should be warning
|
defect
|
gregc
|
8 years
|
| #8908 |
Linux version should not have .exe extension
|
enhancement
|
gregc
|
8 years
|
| #16173 |
ScaleBar remove-model trigger: unopen model
|
defect
|
goddard
|
8 years
|
| #16168 |
Segger: cannot concatenate 'str' and 'tuple' objects
|
defect
|
goddard
|
8 years
|
| #16166 |
Autodock Vina session save: 'NoneType' object is not callable
|
defect
|
Conrad Huang
|
8 years
|
| #14461 |
reading/writing large PDBs
|
enhancement
|
pett
|
8 years
|
| #16152 |
Can't turn on shadows during session restore
|
defect
|
pett
|
8 years
|
| #16089 |
<lambda>() takes exactly 1 argument (0 given)
|
defect
|
pett
|
8 years
|
| #16076 |
Empty color name during session restore
|
defect
|
goddard
|
8 years
|
| #16038 |
Problem when het residue is in modeled sequence
|
defect
|
pett
|
8 years
|
| #16071 |
Crash recording movie
|
defect
|
pett
|
8 years
|
| #16058 |
Maestro: KeyError: 's_m_atom_name'
|
defect
|
Conrad Huang
|
8 years
|
| #16062 |
Benchmark scores
|
task
|
goddard
|
8 years
|
| #16035 |
Failure aligning volume images
|
defect
|
goddard
|
8 years
|
| #16041 |
Origin Index behavior together with the sym command : command line versus GUI.
|
defect
|
goddard
|
8 years
|
| #15913 |
alt locs disrupting backbone peptide bonds
|
defect
|
pett
|
8 years
|
| #16030 |
Benchmark scores
|
task
|
goddard
|
8 years
|
| #11468 |
Generate Cytoscape residue-interaction network from MD simulation
|
enhancement
|
pett
|
8 years
|
| #16010 |
New CASTp server output problematic
|
defect
|
pett
|
8 years
|
| #16022 |
Non-ASCII PDB; ancient Chimera
|
defect
|
pett
|
8 years
|
| #16011 |
Problem saving numpy attributes
|
defect
|
pett
|
8 years
|
| #16001 |
DBPuppet: Permission denied creating lock file
|
defect
|
gregc
|
8 years
|
| #15986 |
Not opening https URLs on Linux
|
defect
|
pett
|
8 years
|
| #15985 |
Benchmark scores
|
task
|
goddard
|
8 years
|
| #15979 |
Smiles: 'list' object has no attribute 'close'
|
defect
|
pett
|
8 years
|
| #15965 |
AutoDock Vina error?
|
defect
|
Conrad Huang
|
8 years
|
| #15968 |
Can't access website from home
|
defect
|
pett
|
8 years
|
| #15962 |
Crash handling gesture event on Mac OS Sierra
|
defect
|
goddard
|
8 years
|
| #15940 |
Saving file: spurious "does not exist"
|
defect
|
pett
|
8 years
|
| #15942 |
Check for Updates dialog: unrecognized platform
|
defect
|
gregc
|
8 years
|
| #15939 |
Various problems
|
defect
|
pett
|
8 years
|
| #15943 |
Followup
|
defect
|
|
8 years
|
| #15927 |
Tk: callback not provided event arg
|
defect
|
pett
|
8 years
|
| #15925 |
StructTools: 'NoneType' object has no attribute 'atoms'
|
defect
|
pett
|
8 years
|
| #15894 |
Consecutive residues only disulphide bonded
|
defect
|
pett
|
9 years
|
| #15914 |
"list residues": Non-unique chain IDs
|
defect
|
Conrad Huang
|
9 years
|
| #15902 |
Session: OverflowError: string to parse is too long
|
defect
|
|
9 years
|
| #15762 |
FindHBond: unexpected tau symmetry
|
defect
|
pett
|
9 years
|
| #15722 |
Homology modelling problem: can't fetch UniProt mappings
|
defect
|
pett
|
9 years
|
| #15172 |
slow Antechamber calculation
|
defect
|
pett
|
9 years
|
| #15047 |
Can't show/reveal sequence
|
defect
|
pett
|
9 years
|
| #15898 |
Reading RMF: "Enum value not defined"" while loading file data
|
defect
|
Conrad Huang
|
9 years
|
| #15888 |
Crash opening PDB file after restoring session
|
defect
|
goddard
|
9 years
|
| #15887 |
Crash restoring session
|
defect
|
goddard
|
9 years
|
| #15878 |
can't normalize zero length array
|
defect
|
pett
|
9 years
|
| #15879 |
_Saving_ file produces "does not exist" error
|
defect
|
pett
|
9 years
|
| #15869 |
sleap: can not find file leaprc.ff14SB
|
defect
|
pett
|
9 years
|
| #15867 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15851 |
DrawElementsInstance unchecked solves High Sierra problem
|
defect
|
goddard
|
9 years
|
| #15860 |
DrawElementsInstance unchecked solves High Sierra problem
|
defect
|
goddard
|
9 years
|
| #15861 |
Missing event arg to callback
|
defect
|
pett
|
9 years
|
| #15848 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15829 |
Rapid Access icon not working in OS X 10.13
|
defect
|
pett
|
9 years
|
| #15832 |
New antechamber incorrectly assigns valences
|
defect
|
pett
|
9 years
|
| #15825 |
Error remembering last dir when closing session
|
defect
|
pett
|
9 years
|
| #15807 |
Antechamber: This version of %1 is not compatible with the version of Windows
|
defect
|
pett
|
9 years
|
| #15818 |
No event arg given to callback
|
defect
|
pett
|
9 years
|
| #15801 |
Problem with XYZ file connectivity
|
defect
|
pett
|
9 years
|
| #15804 |
MD: KeyError: 'iTemp'
|
defect
|
pett
|
9 years
|
| #15796 |
Animate: cif_unitCell cannot be saved with scene
|
defect
|
Conrad Huang
|
9 years
|
| #15795 |
Preset: local variable 'metals' referenced before assignment
|
defect
|
|
9 years
|
| #15785 |
Segger: 'NoneType' object has no attribute 'color'
|
defect
|
goddard
|
9 years
|
| #15777 |
MAV: region not in region browser?
|
defect
|
pett
|
9 years
|
| #15768 |
Blast PDB: cannot align sequences
|
defect
|
Conrad Huang
|
9 years
|
| #15767 |
Chimera registration broken
|
defect
|
Conrad Huang
|
9 years
|
| #15765 |
www.pdb.org SSL certificate failure
|
defect
|
pett
|
9 years
|
| #15754 |
FindHBond: multiple geometry classes
|
defect
|
pett
|
9 years
|
| #15752 |
error opening 4hhb after previous 4hhb hbonds calculation and close session
|
defect
|
pett
|
9 years
|
| #15743 |
Crash opening local file
|
defect
|
pett
|
9 years
|
| #15738 |
x3d2vrml generates illegal VRML Text node
|
defect
|
gregc
|
9 years
|
| #15595 |
Web pages not opening on Mac
|
defect
|
pett
|
9 years
|
| #15712 |
MDA: Non-unique chain IDs
|
defect
|
pett
|
9 years
|
| #15692 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15713 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15716 |
Custom-label dialog with no attr or fixed string throws error on OK/Apply
|
defect
|
pett
|
9 years
|
| #15715 |
Don't send OpenGL debug configuration
|
enhancement
|
goddard
|
9 years
|
| #15703 |
<lambda>() takes at least 1 argument (0 given)
|
defect
|
pett
|
9 years
|
| #15697 |
Session directory (probably) not writable
|
defect
|
pett
|
9 years
|
| #15696 |
Color well event is None
|
defect
|
pett
|
9 years
|
| #15691 |
MD Movie: crash reading Amber trajectory with waters
|
defect
|
pett
|
9 years
|
| #15685 |
Bug report with no Internet connection: AttributeError: 'module' object has no attribute 'WEBACCESS_PREF'
|
defect
|
pett
|
9 years
|
| #15682 |
Reading SDF file: 'list' object has no attribute 'close'
|
defect
|
pett
|
9 years
|
| #13819 |
Failure saving session with partially loaded trajectory and atoms deleted
|
defect
|
pett
|
9 years
|
| #15674 |
Save volume to NetCDF: Invalid data-type for array
|
defect
|
goddard
|
9 years
|
| #15657 |
"Unable to find partial charge" after Gasteiger charges assigned
|
defect
|
pett
|
9 years
|
| #15653 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15639 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15630 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15628 |
Where the heck is the registration link?
|
defect
|
pett
|
9 years
|
| #15612 |
Cannot show sequence
|
defect
|
pett
|
9 years
|
| #15608 |
Error reading PDB file: argument 1 should be a str
|
defect
|
pett
|
9 years
|
| #15601 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15593 |
Can't convert error message to printable
|
defect
|
pett
|
9 years
|
| #15588 |
OpenSave: remember dir: coercing to Unicode: need string or buffer, list found
|
defect
|
pett
|
9 years
|
| #15594 |
CCP4 file symmetry operators with lowercase "x", "y", "z" not parsed
|
defect
|
goddard
|
9 years
|
| #15585 |
PyOpenGL using archaic Numeric.ArrayType
|
defect
|
pett
|
9 years
|
| #15578 |
Bad bonds in Gromacs trajectory
|
defect
|
pett
|
9 years
|
| #15569 |
Make clip not give error if near plane behind far plane
|
enhancement
|
goddard
|
9 years
|
| #15537 |
Trying to show status of reading MRC file: not enough arguments for format string
|
defect
|
goddard
|
9 years
|
| #15544 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15542 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15547 |
PDB2PQR: "created" pseudobonds already deleted
|
defect
|
pett
|
9 years
|
| #15543 |
Crash in MoleculeLensModel::buildBondGraphics
|
defect
|
goddard
|
9 years
|
| #15522 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15493 |
Playing RMF3 file: EOF reached
|
defect
|
Conrad Huang
|
9 years
|
| #15486 |
Crash in MoleculeLensModel::buildBondGraphics
|
defect
|
pett
|
9 years
|
| #15468 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15467 |
Make emdb fetch use Chinese mirror for hostname ending in ".cn"
|
enhancement
|
goddard
|
9 years
|
| #15451 |
Problem with session restore: creating color with empty name
|
defect
|
goddard
|
9 years
|
| #15455 |
Chain picker KeyError
|
defect
|
pett
|
9 years
|
| #15442 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15436 |
Successful OpenGL debug configuration
|
task
|
goddard
|
9 years
|
| #14214 |
Minimize: No MMTK name for atom in standard residue
|
defect
|
pett
|
9 years
|
| #15405 |
<lambda>() takes at least 1 argument (0 given)
|
defect
|
pett
|
9 years
|
| #15400 |
Out of memory defining plane
|
defect
|
pett
|
9 years
|
| #15395 |
Empty help search produces traceback
|
defect
|
pett
|
9 years
|
| #15384 |
RFE: better behavior for bad headers
|
enhancement
|
goddard
|
9 years
|
| #15380 |
Chimera crash on session merge, deleted colors
|
defect
|
goddard
|
9 years
|
| #15378 |
Camera preference category is None
|
defect
|
pett
|
9 years
|
| #15355 |
Chimera 1.11.2 MultiFit /lib/ld-linux.so.2: bad ELF interpreter: No such file or directory
|
defect
|
Conrad Huang
|
9 years
|
| #15354 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15353 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15332 |
Problem fetching SMILES
|
defect
|
pett
|
9 years
|
| #15339 |
Reading APBS output: negative dimensions are not allowed
|
defect
|
goddard
|
9 years
|
| #15334 |
Default camera mode not preserved during session reset
|
defect
|
pett
|
9 years
|
| #15328 |
Error using Rapid Access to bring up closed Select Chains dialog
|
defect
|
pett
|
9 years
|
| #15322 |
MD simulation: MMTK: 'NoneType' object has no attribute 'lower'
|
defect
|
pett
|
9 years
|
| #15312 |
Blast PDB: max() arg is an empty sequence
|
defect
|
Conrad Huang
|
9 years
|
| #15293 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15289 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15266 |
Minimize: environment can only contain strings
|
defect
|
gregc
|
9 years
|
| #15245 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15230 |
MetalGeom: can't rotate about zero vector
|
defect
|
pett
|
9 years
|
| #15229 |
_pickType == None
|
defect
|
pett
|
9 years
|
| #15213 |
Benchmark scores
|
task
|
goddard
|
9 years
|
| #15209 |
Crash while scrolling on Mac OS X 10.12
|
defect
|
goddard
|
9 years
|
| #15207 |
MAV: header save fail for int value
|
defect
|
|
9 years
|
| #15199 |
Crash handling gesture event on Mac OS Sierra
|
defect
|
goddard
|
9 years
|
| #15197 |
Crash while scrolling on Mac OS X 10.12
|
defect
|
goddard
|
9 years
|
| #15196 |
Using dead Atom while updating bond rotations
|
defect
|
pett
|
9 years
|
| #15142 |
DBPuppet: UnicodeDecodeError while trying to generate error message
|
defect
|
gregc
|
9 years
|
| #15195 |
Crash handling gesture event on Mac OS Sierra
|
defect
|
goddard
|
9 years
|
| #15192 |
Crash while scrolling on Mac OS X 10.12
|
defect
|
goddard
|
9 years
|
| #15190 |
~ribcolor parsing broken
|
defect
|
pett
|
9 years
|
| #15189 |
Crash handling gesture event on Mac OS Sierra
|
defect
|
goddard
|
9 years
|
| #15183 |
Crash while scrolling on Mac OS X 10.12
|
defect
|
goddard
|
9 years
|
| #15180 |
<lambda>() takes exactly 1 argument (0 given)
|
defect
|
|
9 years
|
| #15154 |
Crash while scrolling on Mac OS X 10.12
|
defect
|
goddard
|
9 years
|
| #15153 |
Crash handling gesture event on Mac OS Sierra
|
defect
|
goddard
|
9 years
|
| #15091 |
Z-flip map: seg fault
|
defect
|
goddard
|
9 years
|
| #14940 |
Crash while scrolling on Mac OS X 10.12
|
defect
|
goddard
|
9 years
|
| #14960 |
Crash while scrolling or using dropdown on Mac OS X 10.12
|
defect
|
goddard
|
9 years
|
| #14977 |
Crash while scrolling on Mac OS X 10.12
|
defect
|
goddard
|
9 years
|
| #13933 |
Chimera fails at startup (gcc version?)
|
defect
|
gregc
|
10 years
|
| #15035 |
TypeError:<lambda>() takes at least 1 argument (0 given)
|
defect
|
pett
|
10 years
|
| #15016 |
traceback in 'adjust' with 1 arg
|
defect
|
pett
|
10 years
|
| #15012 |
Select by colour works for some colours, not for others?
|
defect
|
pett
|
10 years
|
| #14992 |
MAV: cannot import name BlastproteinService
|
defect
|
Conrad Huang
|
10 years
|
| #14982 |
Assisstance to claculate RMSD value
|
defect
|
pett
|
10 years
|
| #14979 |
<lambda>() takes at least 1 argument (0 given)
|
defect
|
pett
|
10 years
|
| #14700 |
REST fails when opening second mmCIF
|
defect
|
Conrad Huang
|
10 years
|
| #14974 |
cannot import name BlastproteinService
|
defect
|
Conrad Huang
|
10 years
|
| #14971 |
Crash resizing window
|
defect
|
goddard
|
10 years
|
| #14967 |
<lambda>() takes at least 1 argument (0 given)
|
defect
|
pett
|
10 years
|
| #14966 |
<lambda>() takes at least 1 argument (0 given)
|
defect
|
pett
|
10 years
|
| #14946 |
cannot import name BlastproteinService
|
defect
|
Conrad Huang
|
10 years
|
| #14939 |
'RRDistanceMapsDialog' object has no attribute 'diffMatrix'
|
defect
|
Conrad Huang
|
10 years
|
| #14860 |
<lambda>() takes at least 1 argument (0 given)
|
defect
|
pett
|
10 years
|
| #14938 |
Scalar plottables included in atom-deletion check
|
defect
|
pett
|
10 years
|
| #14925 |
Permission denied saving PDB file
|
defect
|
pett
|
10 years
|
| #14923 |
MD: KeyError: 'prodRes'
|
defect
|
pett
|
10 years
|
| #14913 |
Write prmtop file when file name has embedded spaces
|
defect
|
pett
|
10 years
|
| #14904 |
Service 'opal:pdb2pqr_1.9.0' is unavailable
|
defect
|
Conrad Huang
|
10 years
|
| #14900 |
TypeError:<lambda>() takes exactly 1 argument (0 given)
|
defect
|
pett
|
10 years
|
| #14899 |
Benchmark scores
|
task
|
goddard
|
10 years
|
| #14896 |
MAV: session save: region not in region list
|
defect
|
pett
|
10 years
|
| #14881 |
Suppress warning when surfacing many molecules
|
enhancement
|
goddard
|
10 years
|
| #14879 |
Make struts command consider hydrogen bonds
|
enhancement
|
goddard
|
10 years
|
| #14878 |
Crash during window resize
|
defect
|
goddard
|
10 years
|
| #14871 |
problem in entering trajectory parameters in Gromacs
|
defect
|
pett
|
10 years
|
| #14857 |
<lambda>() takes exactly 1 argument (0 given)
|
defect
|
goddard
|
10 years
|
| #14866 |
MD: KeyError: 'prodRes'
|
defect
|
pett
|
10 years
|
| #14867 |
Crash resizing window
|
defect
|
goddard
|
10 years
|
| #14861 |
No residue in molecule
|
defect
|
|
10 years
|
| #14855 |
Benchmark scores
|
task
|
goddard
|
10 years
|
| #14799 |
Trajectory not loading when executed via Cytoscape
|
defect
|
pett
|
10 years
|
| #14843 |
Crashes regularly (window resize)
|
defect
|
goddard
|
10 years
|
| #14845 |
traceback trying to use apbs command ion-related options
|
defect
|
Conrad Huang
|
10 years
|
| #14842 |
<lambda>() takes at least 1 argument (0 given)
|
defect
|
goddard
|
10 years
|
| #14824 |
Wrong crystal symmetry for 1WAP
|
defect
|
goddard
|
10 years
|
| #14811 |
RRDistMaps: underlying C++ Selectable object is missing
|
defect
|
Conrad Huang
|
10 years
|
| #14814 |
<lambda>() takes exactly 1 argument (0 given)
|
defect
|
goddard
|
10 years
|
| #14813 |
PDB2PQR failure to contact service
|
defect
|
Conrad Huang
|
10 years
|
| #14810 |
"rainbow helix" treats contiguous helices as single helix
|
defect
|
pett
|
10 years
|
| #14798 |
No window
|
defect
|
pett
|
10 years
|
| #14802 |
Window resize crash
|
defect
|
goddard
|
10 years
|
| #14796 |
Benchmark scores
|
task
|
goddard
|
10 years
|
| #14790 |
POV-ray color key failure
|
defect
|
pett
|
10 years
|