Changes between Version 1 and Version 2 of phenix-what-3-24-22


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Timestamp:
Mar 22, 2022, 4:23:07 PM (4 years ago)
Author:
Eric Pettersen
Comment:

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  • phenix-what-3-24-22

    v1 v2  
    11= What is Phenix?
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     3Developed since 2002, [https://phenix-online.org/about Phenix] is a comprehensive software package for macromolecular structure determination for crystallographic and electron cryo-EM data.  Features include:
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     5 Automation::  Able to construct initial model without human intervention given reasonable starting data.  Available via GUI or command line.
     6 Ligand fitting:: In addition to automated fitting of known ligands, can identify ligands from a difference map.  Refinement parameters for ligands not in its monomer library can be developed through through its electronic ligand builder and optimization workbench (eLBOW).
     7 Programmable:: Built on C++/Python, many fundamental objects/functions provided by Computational Crystallography Toolbox (cctbx) and scriptable from there.  Moving to Python 3.
     8 Broad/diverse development team:: Current groups: Paul Adams (LBL); Tom Terwilliger (LANL); Randy Read (Cambridge); David and Jane Richardson (Duke)