Changes between Version 2 and Version 3 of phenix-8-6-25

Timestamp:

Aug 6, 2025, 11:20:20 AM (3 months ago)

Author:

pett

Comment:

--

phenix-8-6-25

@@ -8 +8 @@
  * Open sharpened maps in main thread
  * Handle JSON output regardless of Phenix version
- * Note the pre-fitted structures option only available in Phenix 2.0+
+ * Note that pre-fitted structures option only available in Phenix 2.0+
 
 === Fit Ligand ===
- * Open sharpened 
- * Optionally show H-bonds formed by fit ligand
- * Add citation info widget
- * Iteration with Tom Terwilliger to get:
-   - JSON output
-   - Success/failure indicator
-   - Reason for any failure
-   - Map CC
-   - Multiple fits
- * Better handling of errors in threads
+ * "Show clashes" option
+ * Got feedback from Tom T. as to why map cropping is needed if there's a search center
+ * Worked on placing a ligand for specifying search center and bounds
 
 = ChimeraX completed =