Changes between Version 1 and Version 2 of phenix-6-20-24


Ignore:
Timestamp:
Jun 19, 2024, 2:04:28 PM (17 months ago)
Author:
Eric Pettersen
Comment:

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  • phenix-6-20-24

    v1 v2  
    11= Phenix =
    2  * Stopped in to phenix-developers meeting for a second
     2 * Made a release on the Toolshed
     3 * Added citation widgets to tool interfaces
    34
    45=== Fit Loops ===
    5  * Two-tier remodeling limits
    6  * Use table instead of list
    7  * Separate warnings from instructions
    8  * Additional checking that fit-loops results have correct sequence
    9  * Reported bug to Tom Terwilliger
    10 
    11 === Emplace Local ===
    12  * Paper still being worked on I hear
     6 * Link to "select" help
     7 * Sequence input file needs to be FASTA
     8 * Revised tool interface text
     9 * Colorized table entries
     10 * Raised warning/not-allowed thresholds to 15/20 residues
    1311
    1412= ChimeraX completed =
    15  * Tables support saving CSV/TSV files
    16  * Shipped annotated SPICE file off to Tristan
    17  * Preserve docked tool sizes
    18  * Avoid weird initial window placement when multiple displays
    19  * Allow one-letter codes in swapaa
    20  * Missing-attribute operator (!^)
    21  * Worm support (internal + command/GUI; update presets)
    22  * Fixed garbage-collection crash
    23  * PDB-REDO support
    24  * "Select" tab in Render By Attribute
    25  * MOE Mol2 ViewDock support
     13 * Select By Attribute
     14 * Improved interface behavior for integer histograms
     15 * Espaloma may be able to be used directly
     16 * Label missing segments with number of residues
     17 * Replace residues
     18 * Have ViewDockX columns sort numerically when appropriate
     19 * Have shown altlocs respond to altloc deletion and hydrogen addition
     20 * Allow C++ layer to emit status messages
     21 * Fixed (YA) garbage-collection crash
     22 * Update chain sequence
     23 * Handle deleted UniProt entries