Changes between Initial Version and Version 1 of phenix-6-1-23


Ignore:
Timestamp:
May 31, 2023, 1:37:38 PM (2 years ago)
Author:
Eric Pettersen
Comment:

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  • phenix-6-1-23

    v1 v1  
     1**Phenix**
     2 * Allow development builds to be used as phenix installation
     3 * Further work on Randy Read's fit-in-map tool, (Phenix: voyager.emplace_local, ChimeraX: Local EM Fitting):
     4    * Clarified wording in search-center dialog
     5    * Use transform from emplace_local rather than superposition
     6    * Make maps opaque while search sphere displayed
     7 * Decided on fit_loops as next tool
     8
     9**ChimeraX completed**
     10 * Build Structure
     11   * Adjust Torsions (also in selection context menu)
     12   * Adjust Angles
     13 * Handle Mol2 files that have GAFF types
     14 * Charge computation falls back to more reliable method if faster method fails (courtesy Tristan)
     15 * 'Info' commands can save to file
     16 * Matchmaker
     17   * More reliably switch to 'sensible' similarity scoring matrix
     18   * 'reportMatrix' option
     19 * Made hiding/closing of large numbers of models faster
     20   * Override Strucure 'display' attribute rather than use CLOSE_MODELS trigger
     21   * Batch updating of collections
     22 * Default format/suffix handling