Changes between Version 2 and Version 3 of phenix-4-10-25


Ignore:
Timestamp:
Apr 8, 2025, 2:27:39 PM (8 months ago)
Author:
Eric Pettersen
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • phenix-4-10-25

    v2 v3  
    1313
    1414= ChimeraX completed =
    15  * Integrated LAMMPS into main ChimeraX code
    16  * Session saving support in Profile Grids:
    17  * Significantly improved perceived load time of large alignments
    18    - Suppress unnecessary copying of sequences
    19    - If >10000 sequences, don't use AL2CO
    20    - Cache sequence information when computing identity histogram
    21  * Made "original look" preset undo tube helices
    22  * Fixed memory leak in command atom specs
    23  * Developer documentation:
    24    - Discussed the use of keyword args in commands
    25    - Described the Qt shim
    26  * Structure matching using alignment sequences; options:
    27    - High identity
    28    - Iteration
    29    - Just active region
    30    - Create region showing match
    31  * Sequence renaming
    32  * Aniso command
    33  * Deployed !UserError alternative for tools
     15 * Generate mmCIF table from CRYST1 PDB metadata
     16 * Prevent nitrogens from both coordinating a metal and being a donor
     17 * Option to suppress !MatchMaker parameter logging
     18 * MUSCLE 5
     19 * More accurate colors in Fit Cavities table
     20 * MD plotting
     21 * Sequence Viewer vs. Profile Grid preference (+ category menu vs. tabs)