Changes between Version 3 and Version 4 of phenix-2-27-25

Timestamp:

Feb 21, 2025, 5:23:45 PM (8 months ago)

Author:

pett

Comment:

--

phenix-2-27-25

@@ -17 +17 @@
 = ChimeraX completed =
  * Nuke metadata and remap mmcif_chain_ids when combining models
- * Prevent most tools from docking to the top or bottom of the main window
- * "Details" column in region browser
- * Added chain-attribute support to "color byattr" command and Render by Attribute tool
- * Find Cavities
-   - Allow customization of cavity-detection parameters
-   - Cavity depth attributes/columns
-   - Color cavities by depth [[Image(by-depth.png)]]
-   - If replacing a docked dialog, dock the replacement
-   - Don't recolor surface if colored externally
- * Handle problem where labels get deleted before structure is opened [missing structure + morph]
+ * Profile Grids:
+   - Session saving
+ * Significantly improved perceived load time of large alignments
+   - Suppress unnecessary copying of sequences
+   - If >10000 sequences, don't use AL2CO
+   - Cache sequence information when computing identity histogram
+ * Made "original look" preset undo tube helices
+ * Fixed memory leak in command atom specs
+ * Described the Qt shim in the developer's docs
  * Structure matching using alignment sequences; options:
    - High identity