Phenix

Fit Loops

• Revamped command/backend to handle possibly remodeling *only* a gap (no side residues)
• Fixed ChimeraX bug that incorrectly sequenced newly modeled gap residues
• Have tool warn user when modeling too many residues

Emplace Local

• Tool interface tweaks based on feedback
  • Left-align text
  • Align check boxes
  • Space between check boxes and bottom buttons

ChimeraX completed

• Made tables more compact
• Don't send blank residue names to Antechamber
• idatm_failed boolean for SPICE processing
• File→Fetch by ID
• Glycosylation support in Change Chain IDs and command
• Specify model number in 'open'
• Size atoms by attribute value
• Don't output SEQRES for manually joined chains
• pbond command
• Modified sequence-header code to work in library distribution
• 'measure rotation' can now make true axis objects
• Don't send truncated HIS to Antechamber
• Modeller: handle target deletion relative to template
• Preliminary scene support
• Nuke blank chain IDs when combining models