Changes between Initial Version and Version 1 of phenix-12-19-24


Ignore:
Timestamp:
Dec 18, 2024, 10:00:23 AM (13 months ago)
Author:
Eric Pettersen
Comment:

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  • phenix-12-19-24

    v1 v1  
     1= Phenix =
     2
     3=== Local EM Fitting ===
     4 * Support pre-fitted models
     5
     6=== Fit Ligand ===
     7 * Mandatory resolution command arg / tool widget
     8 * Tool's chain ID / res num widgets pass values to command
     9 * Made command fully functional, including checking availability of chain ID + res num
     10 * Interactive search-center adjustment
     11
     12= ChimeraX completed =
     13 * Added discussion of declaring dependencies on !PyPi packages to programming documentation
     14 * Made AddH not check for updating missing-structure pseudobonds
     15 * Allow H-bond and clash/contact output to be on a per-residue basis
     16 * Updating a structure sequence when a residue type changes wasn't accounting for gaps
     17 * "center" option for `open` command
     18 * Altlocs
     19   - Small revamp of altlocs tool in preparation for "show all altlocs" capability
     20   - Update ribbon if backbone altlocs changed
     21 * Render by Attribute
     22   - Histogram scaling
     23   - Save to file button
     24   - Remember histogram markers on a per-attribute basis
     25   - Keep markers at same value position (rather than relative position) when expanding histogram range
     26 * Fixed bug making chains where internal residue is non-polymeric
     27 * Select by column identity
     28 * [http://www.cgl.ucsf.edu/home/meng/jclub/kvfinder.html#/ KVFinder] tool/command