Changes between Version 1 and Version 2 of phenix-11-20-25

Timestamp:

Nov 19, 2025, 2:11:27 PM (19 hours ago)

Author:

Eric Pettersen

Comment:

--

phenix-11-20-25

@@ -5 +5 @@
 
 === Fit Ligand ===
+ * Functional blob picking
  * Added instructions for blob picking
 
 = ChimeraX completed =
- * Model-panel interface for grouping models
- * Profile Grid
-   - Show number of chains associated with cell mouse is in (in addition to number of sequences)
- * Minimization
-   - Improved finding the OpenMM atom type for single-atom ions
-   - Temporary kludge to fix charges in non-standard residues
-   - If GPU fails, fall back to CPU
-   - Don't protonate sulfurs coordinating metals
-   - Tool
+ * !ViewDock
+   - Don't forget about hidden ligands when saving session
+ * Fixed bug where deleting atoms of a model and its submodels would cause a crash
+ * Moved Log settings from main ChimeraX preferences to the Log tool
  * Speeded up opening large ligand files by 2x
    - Bottleneck was chain-reporting code for NMR ensembles
@@ -27 +23 @@
  * Alert users to use ASCII paths for Gromacs trajectories
  * Scenes
+   - Skip models that don't save in sessions (e.g. individual 2D labels)
    - Interpolation of coordinate sets
    - Catch error restoring scene with deleted structure elements, warn user, and restore what we can
    - Remember more structure attributes in scenes, and interpolate simple numeric ones
    - Tool:
+     - Save→Add and separate Add/Update buttons
      - Drag and drop to reorder scenes
      - When adding scene, ignore conflicting name if it was automatically generated