Changes between Initial Version and Version 1 of phenix-10-15-25


Ignore:
Timestamp:
Oct 15, 2025, 10:16:18 AM (8 days ago)
Author:
Eric Pettersen
Comment:

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  • phenix-10-15-25

    v1 v1  
     1= Phenix =
     2
     3=== Fit Ligand ===
     4 * Convert "ligand lengths" to angstroms
     5 * Send cropped map
     6 * Make command handle pre-existing model as ligand
     7 * Interactive search adjustment:
     8    * center (example ligand)
     9    * bounds (outline box)
     10      * Enforce center remains within bounds
     11
     12= ChimeraX completed =
     13 * Chirality command
     14 * Made opening coordinates by default replace if 1 coordinates set, otherwise append
     15 * Profile Grid
     16   - Show column number mouse is in
     17   - Report number of sequences matching chosen cells
     18 * !ViewDock
     19   - Got Maestro to work with new !ViewDock
     20   - Improved column-control check box layout in extreme cases
     21   - Long description values in one column instead of two
     22   - Scrollable description area
     23   - More readable column titles
     24 * Minimize handles NAD, etc. now
     25 * Fixed session-combine bug with global pseudobond manager (don't clear groups)
     26 * Scenes
     27   - Don't try to call restore_scene on intermediate-derived classes
     28   - Get pseudobonds to save/restore
     29   - Don't restore Model.overall_color
     30   - Make Structure responsible for all atomic scene data (rather than Atoms, Residues, etc.)
     31   - Have Scenes tool handle scene names with spaces
     32   - 2D labels