Changes between Initial Version and Version 1 of phenix-1-29-26


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Timestamp:
Jan 23, 2026, 5:13:06 PM (4 days ago)
Author:
Eric Pettersen
Comment:

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  • phenix-1-29-26

    v1 v1  
     1= Phenix =
     2
     3=== Fit Loops ===
     4 * If structure lacks sequence information, tell user how to supply it
     5
     6=== Fit Ligand ===
     7 * Functional blob picking
     8 * Added instructions for blob picking
     9
     10= ChimeraX completed =
     11 * !ViewDock
     12   - Don't forget about hidden ligands when saving session
     13 * Fixed bug where deleting atoms of a model and its submodels would cause a crash
     14 * Moved Log settings from main ChimeraX preferences to the Log tool
     15 * Speeded up opening large ligand files by 2x
     16   - Bottleneck was chain-reporting code for NMR ensembles
     17 * Altloc Explorer
     18   - Button to show/hide all existing altlocs
     19   - Report occupancy in tooltip (also in main 3D window)
     20 * !ProfileGrid
     21   - Reporting column info on the fly too slow for very large alignment; for those only report on hover
     22 * Added ability to time out / continue long-running blocking jobs
     23 * Alert users to use ASCII paths for Gromacs trajectories
     24 * Scenes
     25   - Skip models that don't save in sessions (e.g. individual 2D labels)
     26   - Interpolation of coordinate sets
     27   - Catch error restoring scene with deleted structure elements, warn user, and restore what we can
     28   - Remember more structure attributes in scenes, and interpolate simple numeric ones
     29   - Tool:
     30     - Save→Add and separate !Add/Update buttons
     31     - Drag and drop to reorder scenes
     32     - When adding scene, ignore conflicting name if it was automatically generated