Weekly Benchmarking Results

Benchmarks are run once-a-week using chimerax-daily. Most commands are executed multiple times (5) and the computed result is from discarding the high and low values and averaging the rest. Memory usage is taken from /usr/bin/pmap.

0.7 Results

UCSF ChimeraX version: 0.7 (2018-08-07)
Running benchmark on franklin.cgl.ucsf.edu
Starting memory use:  2526500K
Average time: command
24.6924 ± 0.417: open 3j3q format mmcif loginfo false
10.3266 ± 0.041: (3j3q mmcif) close
Increased memory use: 2443868K
0.1514 ± 0.002: open 3fx2 format pdb loginfo false
0.0082 ± 0.0: (3fx2 pdb) close
0.1512 ± 0.001: open 3fx2 format mmcif loginfo false
0.0088 ± 0.0: (3fx2 mmcif) close
Increased memory use: 3044K
0.214 ± 0.002: open 2hmg format pdb loginfo false
0.0299 ± 0.001: (2hmg pdb) close
0.142 ± 0.008: open 2hmg format mmcif loginfo false
0.0272 ± 0.001: (2hmg mmcif) close
Increased memory use: 4372K
5.2919 ± 0.196: open 5xnl format pdb loginfo false
0.2523 ± 0.02: (5xnl pdb) close
5.6077 ± 0.54: open 5xnl format mmcif loginfo false
0.3775 ± 0.029: (5xnl mmcif) close
Increased memory use: 45844K
18.8386: style ball (3j3q)
Increased memory use: 17492K
26.8163: cartoon (3j3q)
Increased memory use: 0K
Ending memory use:    5041120K
Total memory increase: 2514620K

0.8 Results

UCSF ChimeraX version: 0.8 (2018-12-17)
Running benchmark on franklin.cgl.ucsf.edu
Starting memory use:  353028K
Average time: command
23.8179 ± 0.246: open 3j3q format mmcif loginfo false
10.1173 ± 0.004: (3j3q mmcif) close
Increased memory use: 2439960K
0.1543 ± 0.002: open 3fx2 format pdb loginfo false
0.0087 ± 0.0: (3fx2 pdb) close
0.156 ± 0.004: open 3fx2 format mmcif loginfo false
0.0096 ± 0.0: (3fx2 mmcif) close
Increased memory use: 33044K
0.1583 ± 0.002: open 2hmg format pdb loginfo false
0.0239 ± 0.0: (2hmg pdb) close
0.1492 ± 0.0: open 2hmg format mmcif loginfo false
0.0298 ± 0.003: (2hmg mmcif) close
Increased memory use: 4628K
5.2829 ± 0.29: open 5xnl format pdb loginfo false
0.2518 ± 0.02: (5xnl pdb) close
4.8167 ± 0.073: open 5xnl format mmcif loginfo false
0.3222 ± 0.004: (5xnl mmcif) close
Increased memory use: 46100K
18.4459: style ball (3j3q)
Increased memory use: 36608K
29.4847: cartoon (3j3q)
Increased memory use: 0K
Ending memory use:    2913368K
Total memory increase: 2560340K

2019-03-14 Results

UCSF ChimeraX version: 0.9 (2019-03-14)
Running benchmark on franklin.cgl.ucsf.edu
Starting memory use:  345880K
Average time: command
26.1676 ± 0.184: open 3j3q format mmcif loginfo false
10.8296 ± 0.048: (3j3q mmcif) close
Increased memory use: 2572716K
0.1955 ± 0.007: open 3fx2 format pdb loginfo false
0.0103 ± 0.001: (3fx2 pdb) close
0.2091 ± 0.004: open 3fx2 format mmcif loginfo false
0.0117 ± 0.001: (3fx2 mmcif) close
Increased memory use: 32788K
0.1986 ± 0.024: open 2hmg format pdb loginfo false
0.0307 ± 0.004: (2hmg pdb) close
0.1937 ± 0.004: open 2hmg format mmcif loginfo false
0.0366 ± 0.004: (2hmg mmcif) close
Increased memory use: 276K
4.9111 ± 0.259: open 5xnl format pdb loginfo false
0.3123 ± 0.028: (5xnl pdb) close
5.0416 ± 0.022: open 5xnl format mmcif loginfo false
0.3673 ± 0.03: (5xnl mmcif) close
Increased memory use: 45332K
19.2233: style ball (3j3q)
Increased memory use: 14272K
31.1865: cartoon (3j3q)
Increased memory use: 20K
Ending memory use:    3011284K
Total memory increase: 2665404K