Changes between Version 4 and Version 5 of benchmarking


Ignore:
Timestamp:
Mar 14, 2019, 5:07:11 PM (7 years ago)
Author:
Greg Couch
Comment:

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  • benchmarking

    v4 v5  
    11= Weekly Benchmarking Results =
    22
    3 Benchmarks are run once-a-week using chimerax-daily.
     3Benchmarks are run once-a-week using chimerax-daily.  Most commands are executed multiple times (5) and the computed result is from discarding the high and low values and averaging the rest.
    44
    55== 0.7 Results ==
    66{{{
    7 UCSF ChimeraX version: 0.7 (2018-08-07)
    8 Running benchmark on wilkins.cgl.ucsf.edu
    9 Starting memory use:  953628K
     7CSF ChimeraX version: 0.7 (2018-08-07)
     8Running benchmark on franklin.cgl.ucsf.edu
     9Starting memory use:  2526500K
    1010Average time: command
    11 28.7895 ± 0.851: open 3j3q format mmcif loginfo false
    12 12.0798 ± 0.031: (3j3q mmcif) close
    13 Increased memory use: 2444132K
    14 0.134 ± 0.018: open 3fx2 format pdb loginfo false
    15 0.0073 ± 0.0: (3fx2 pdb) close
    16 0.1197 ± 0.0: open 3fx2 format mmcif loginfo false
    17 0.0075 ± 0.0: (3fx2 mmcif) close
    18 Increased memory use: 2788K
    19 0.1847 ± 0.001: open 2hmg format pdb loginfo false
    20 0.0342 ± 0.0: (2hmg pdb) close
    21 0.1867 ± 0.001: open 2hmg format mmcif loginfo false
    22 0.044 ± 0.0: (2hmg mmcif) close
     1124.6924 ± 0.417: open 3j3q format mmcif loginfo false
     1210.3266 ± 0.041: (3j3q mmcif) close
     13Increased memory use: 2443868K
     140.1514 ± 0.002: open 3fx2 format pdb loginfo false
     150.0082 ± 0.0: (3fx2 pdb) close
     160.1512 ± 0.001: open 3fx2 format mmcif loginfo false
     170.0088 ± 0.0: (3fx2 mmcif) close
     18Increased memory use: 3044K
     190.214 ± 0.002: open 2hmg format pdb loginfo false
     200.0299 ± 0.001: (2hmg pdb) close
     210.142 ± 0.008: open 2hmg format mmcif loginfo false
     220.0272 ± 0.001: (2hmg mmcif) close
    2323Increased memory use: 4372K
    24 5.2344 ± 0.036: open 5xnl format pdb loginfo false
    25 0.381 ± 0.002: (5xnl pdb) close
    26 5.7841 ± 0.01: open 5xnl format mmcif loginfo false
    27 0.4846 ± 0.001: (5xnl mmcif) close
     245.2919 ± 0.196: open 5xnl format pdb loginfo false
     250.2523 ± 0.02: (5xnl pdb) close
     265.6077 ± 0.54: open 5xnl format mmcif loginfo false
     270.3775 ± 0.029: (5xnl mmcif) close
    2828Increased memory use: 45844K
    29 18.0096 ± 0.0: style ball (3j3q)
    30 Increased memory use: 17488K
    31 21.6493 ± 0.0: cartoon (3j3q)
    32 Increased memory use: 256K
    33 Ending memory use:    3468508K
    34 Total memory increase: 2514880K
     2918.8386: style ball (3j3q)
     30Increased memory use: 17492K
     3126.8163: cartoon (3j3q)
     32Increased memory use: 0K
     33Ending memory use:    5041120K
     34Total memory increase: 2514620K
    3535}}}
    3636== 2019-03-14 Results ==
    3737{{{
    3838UCSF ChimeraX version: 0.9 (2019-03-14)
    39 Running benchmark on wilkins.cgl.ucsf.edu
    40 Starting memory use:  345616K
     39Running benchmark on franklin.cgl.ucsf.edu
     40Starting memory use:  345880K
    4141Average time: command
    42 27.7883 ± 0.068: open 3j3q format mmcif loginfo false
    43 11.7709 ± 0.034: (3j3q mmcif) close
    44 Increased memory use: 2414988K
    45 0.1496 ± 0.021: open 3fx2 format pdb loginfo false
    46 0.0078 ± 0.0: (3fx2 pdb) close
    47 0.1319 ± 0.001: open 3fx2 format mmcif loginfo false
    48 0.008 ± 0.0: (3fx2 mmcif) close
     4226.1676 ± 0.184: open 3j3q format mmcif loginfo false
     4310.8296 ± 0.048: (3j3q mmcif) close
     44Increased memory use: 2572716K
     450.1955 ± 0.007: open 3fx2 format pdb loginfo false
     460.0103 ± 0.001: (3fx2 pdb) close
     470.2091 ± 0.004: open 3fx2 format mmcif loginfo false
     480.0117 ± 0.001: (3fx2 mmcif) close
    4949Increased memory use: 32788K
    50 0.1961 ± 0.009: open 2hmg format pdb loginfo false
    51 0.0322 ± 0.001: (2hmg pdb) close
    52 0.1916 ± 0.001: open 2hmg format mmcif loginfo false
    53 0.042 ± 0.001: (2hmg mmcif) close
     500.1986 ± 0.024: open 2hmg format pdb loginfo false
     510.0307 ± 0.004: (2hmg pdb) close
     520.1937 ± 0.004: open 2hmg format mmcif loginfo false
     530.0366 ± 0.004: (2hmg mmcif) close
     54Increased memory use: 276K
     554.9111 ± 0.259: open 5xnl format pdb loginfo false
     560.3123 ± 0.028: (5xnl pdb) close
     575.0416 ± 0.022: open 5xnl format mmcif loginfo false
     580.3673 ± 0.03: (5xnl mmcif) close
     59Increased memory use: 45332K
     6019.2233: style ball (3j3q)
     61Increased memory use: 14272K
     6231.1865: cartoon (3j3q)
    5463Increased memory use: 20K
    55 4.9433 ± 0.017: open 5xnl format pdb loginfo false
    56 0.4089 ± 0.004: (5xnl pdb) close
    57 5.3273 ± 0.008: open 5xnl format mmcif loginfo false
    58 0.525 ± 0.003: (5xnl mmcif) close
    59 Increased memory use: 45588K
    60 17.5871 ± 0.0: style ball (3j3q)
    61 Increased memory use: 98056K
    62 22.1897 ± 0.0: cartoon (3j3q)
    63 Increased memory use: 276K
    64 Ending memory use:    2937332K
    65 Total memory increase: 2591716K
     64Ending memory use:    3011284K
     65Total memory increase: 2665404K
    6666}}}