Changes between Version 3 and Version 4 of benchmarking


Ignore:
Timestamp:
Mar 14, 2019, 3:13:04 PM (7 years ago)
Author:
Greg Couch
Comment:

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Legend:

Unmodified
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Modified

  • benchmarking

    v3 v4  
    99Starting memory use:  953628K
    1010Average time: command
    11 27.9899 ± 0.065: open 3j3q format mmcif loginfo false
    12 11.9547 ± 0.125: (3j3q mmcif) close
    13 Increased memory use: 2444644K
    14 0.1213 ± 0.0: open 3fx2 format pdb loginfo false
     1128.7895 ± 0.851: open 3j3q format mmcif loginfo false
     1212.0798 ± 0.031: (3j3q mmcif) close
     13Increased memory use: 2444132K
     140.134 ± 0.018: open 3fx2 format pdb loginfo false
    15150.0073 ± 0.0: (3fx2 pdb) close
    16 0.1203 ± 0.001: open 3fx2 format mmcif loginfo false
     160.1197 ± 0.0: open 3fx2 format mmcif loginfo false
    17170.0075 ± 0.0: (3fx2 mmcif) close
    18 Increased memory use: 2276K
    19 0.2018 ± 0.02: open 2hmg format pdb loginfo false
    20 0.0348 ± 0.0: (2hmg pdb) close
    21 0.1869 ± 0.0: open 2hmg format mmcif loginfo false
    22 0.0441 ± 0.0: (2hmg mmcif) close
    23 Increased memory use: 4628K
    24 5.5969 ± 0.084: open 5xnl format pdb loginfo false
    25 0.3805 ± 0.003: (5xnl pdb) close
    26 5.8053 ± 0.011: open 5xnl format mmcif loginfo false
    27 0.4853 ± 0.001: (5xnl mmcif) close
    28 Increased memory use: 45588K
    29 18.0232 ± 0.0: style ball (3j3q)
     18Increased memory use: 2788K
     190.1847 ± 0.001: open 2hmg format pdb loginfo false
     200.0342 ± 0.0: (2hmg pdb) close
     210.1867 ± 0.001: open 2hmg format mmcif loginfo false
     220.044 ± 0.0: (2hmg mmcif) close
     23Increased memory use: 4372K
     245.2344 ± 0.036: open 5xnl format pdb loginfo false
     250.381 ± 0.002: (5xnl pdb) close
     265.7841 ± 0.01: open 5xnl format mmcif loginfo false
     270.4846 ± 0.001: (5xnl mmcif) close
     28Increased memory use: 45844K
     2918.0096 ± 0.0: style ball (3j3q)
    3030Increased memory use: 17488K
    31 21.7844 ± 0.0: cartoon (3j3q)
    32 Increased memory use: 176392K
    33 Ending memory use:    3644644K
    34 Total memory increase: 2691016K
     3121.6493 ± 0.0: cartoon (3j3q)
     32Increased memory use: 256K
     33Ending memory use:    3468508K
     34Total memory increase: 2514880K
    3535}}}
    3636== 2019-03-14 Results ==
    … …  
    3838UCSF ChimeraX version: 0.9 (2019-03-14)
    3939Running benchmark on wilkins.cgl.ucsf.edu
    40 Starting memory use:  345888K
     40Starting memory use:  345616K
    4141Average time: command
    42 28.0613 ± 0.149: open 3j3q format mmcif loginfo false
    43 12.8448 ± 0.748: (3j3q mmcif) close
    44 Increased memory use: 2654124K
    45 0.1615 ± 0.028: open 3fx2 format pdb loginfo false
    46 0.0086 ± 0.0: (3fx2 pdb) close
    47 0.1629 ± 0.041: open 3fx2 format mmcif loginfo false
    48 0.0085 ± 0.0: (3fx2 mmcif) close
    49 Increased memory use: -117348K
    50 0.1913 ± 0.003: open 2hmg format pdb loginfo false
    51 0.0337 ± 0.0: (2hmg pdb) close
    52 0.1947 ± 0.003: open 2hmg format mmcif loginfo false
    53 0.0433 ± 0.0: (2hmg mmcif) close
     4227.7883 ± 0.068: open 3j3q format mmcif loginfo false
     4311.7709 ± 0.034: (3j3q mmcif) close
     44Increased memory use: 2414988K
     450.1496 ± 0.021: open 3fx2 format pdb loginfo false
     460.0078 ± 0.0: (3fx2 pdb) close
     470.1319 ± 0.001: open 3fx2 format mmcif loginfo false
     480.008 ± 0.0: (3fx2 mmcif) close
     49Increased memory use: 32788K
     500.1961 ± 0.009: open 2hmg format pdb loginfo false
     510.0322 ± 0.001: (2hmg pdb) close
     520.1916 ± 0.001: open 2hmg format mmcif loginfo false
     530.042 ± 0.001: (2hmg mmcif) close
     54Increased memory use: 20K
     554.9433 ± 0.017: open 5xnl format pdb loginfo false
     560.4089 ± 0.004: (5xnl pdb) close
     575.3273 ± 0.008: open 5xnl format mmcif loginfo false
     580.525 ± 0.003: (5xnl mmcif) close
     59Increased memory use: 45588K
     6017.5871 ± 0.0: style ball (3j3q)
     61Increased memory use: 98056K
     6222.1897 ± 0.0: cartoon (3j3q)
    5463Increased memory use: 276K
    55 4.7655 ± 0.118: open 5xnl format pdb loginfo false
    56 0.3989 ± 0.008: (5xnl pdb) close
    57 5.3778 ± 0.042: open 5xnl format mmcif loginfo false
    58 0.5233 ± 0.016: (5xnl mmcif) close
    59 Increased memory use: 45332K
    60 17.9285 ± 0.0: style ball (3j3q)
    61 Increased memory use: 66692K
    62 19.7871 ± 0.0: cartoon (3j3q)
    63 Increased memory use: 373732K
    64 Ending memory use:    3368696K
    65 Total memory increase: 3022808K
     64Ending memory use:    2937332K
     65Total memory increase: 2591716K
    6666}}}