Changes between Version 2 and Version 3 of SurfaceCategories


Ignore:
Timestamp:
Apr 29, 2015, 3:57:40 PM (10 years ago)
Author:
Elaine Meng
Comment:

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  • SurfaceCategories

    v2 v3  
    9191== Default surface categories ==
    9292
    93 Maybe we could use the same default surfcats as in Chimera1, with the modification: splitting main by chain ID. Not sure what the resulting sub-main category names should be, possibly just a concatenation of “main” and the chain ID.
     93Maybe we could use the same default surfcats as in Chimera1, with the modification: splitting main by chain ID. Not sure what the resulting sub-main category names should be, possibly just a concatenation of “main” and the chain ID.
     94
     95ECM added 30 Apr 2015: Another modification to consider would be excluding covalently attached ligands from main, especially glycosylations, unless they already have their own separate chain IDs.  If they weren't added to ligand, we would have to come up with some additional name.  Another idea for the names of the main* categories is the type of molecule concatenated with chain ID, something like protA, protB, nucC but still all being shown when surface is used without a specification or selection.
    9496
    9597Chimera1 default surface categories are mutually exclusive (see [http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/surface.html#surfcats membership rules]):