Changes between Version 1 and Version 2 of PrivacyAndSecurity


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Timestamp:
Dec 1, 2025, 7:12:11 PM (3 hours ago)
Author:
Tom Goddard
Comment:

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  • PrivacyAndSecurity

    v1 v2  
    99== Databases ==
    1010
    11 Fetching atomic models or experimental data from databases such as the PDB, EMDB, AlphaFold database, PubChem, UniProt, and many others sends the ID codes or search test you specify to those database sites.  The ChimeraX documentation lists the databases used to fetch data via ChimeraX commands
     11Fetching atomic models or experimental data from databases such as the PDB, EMDB, AlphaFold database, !PubChem, !UniProt, and many others sends the ID codes or search test you specify to those database sites.  The ChimeraX documentation lists the databases used to fetch data via ChimeraX commands
    1212[https://rbvi.ucsf.edu/chimerax/docs/user/commands/open.html#fetch Online sources] and the [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/fetch.html Fetch By Id] graphics user interface.
    1313
     
    4444== ChimeraX code ==
    4545
    46 The ChimeraX software relies on over 100 third-party open-source packages.  The code developed by the UCSF RBVI lab is all [https://github.com/RBVI/ChimeraX/ available at Github].  The [https://github.com/RBVI/ChimeraX/blob/develop/pyproject.toml pyproject.toml] source file lists the packages from the Python PyPi package management system that are included. A more extensive list of [https://www.rbvi.ucsf.edu/chimerax/docs/embedded.html software embedded in ChimeraX] including packages in other languages (e.g. AmberTools, ffmpeg, ...) is provided in the documentation.
     46The ChimeraX software relies on over 100 third-party open-source packages.  The code developed by the UCSF RBVI lab is all [https://github.com/RBVI/ChimeraX/ available at Github].  The [https://github.com/RBVI/ChimeraX/blob/develop/pyproject.toml pyproject.toml] source file lists the packages from the Python !PyPi package management system that are included. A more extensive list of [https://www.rbvi.ucsf.edu/chimerax/docs/embedded.html software embedded in ChimeraX] including packages in other languages (e.g. !AmberTools, ffmpeg, ...) is provided in the documentation.
    4747
    4848== ChimeraX Toolshed ==