Changes between Version 1 and Version 2 of PrivacyAndSecurity
- Timestamp:
- Dec 1, 2025, 7:12:11 PM (3 hours ago)
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PrivacyAndSecurity
v1 v2 9 9 == Databases == 10 10 11 Fetching atomic models or experimental data from databases such as the PDB, EMDB, AlphaFold database, PubChem,UniProt, and many others sends the ID codes or search test you specify to those database sites. The ChimeraX documentation lists the databases used to fetch data via ChimeraX commands11 Fetching atomic models or experimental data from databases such as the PDB, EMDB, AlphaFold database, !PubChem, !UniProt, and many others sends the ID codes or search test you specify to those database sites. The ChimeraX documentation lists the databases used to fetch data via ChimeraX commands 12 12 [https://rbvi.ucsf.edu/chimerax/docs/user/commands/open.html#fetch Online sources] and the [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/fetch.html Fetch By Id] graphics user interface. 13 13 … … 44 44 == ChimeraX code == 45 45 46 The ChimeraX software relies on over 100 third-party open-source packages. The code developed by the UCSF RBVI lab is all [https://github.com/RBVI/ChimeraX/ available at Github]. The [https://github.com/RBVI/ChimeraX/blob/develop/pyproject.toml pyproject.toml] source file lists the packages from the Python PyPi package management system that are included. A more extensive list of [https://www.rbvi.ucsf.edu/chimerax/docs/embedded.html software embedded in ChimeraX] including packages in other languages (e.g.AmberTools, ffmpeg, ...) is provided in the documentation.46 The ChimeraX software relies on over 100 third-party open-source packages. The code developed by the UCSF RBVI lab is all [https://github.com/RBVI/ChimeraX/ available at Github]. The [https://github.com/RBVI/ChimeraX/blob/develop/pyproject.toml pyproject.toml] source file lists the packages from the Python !PyPi package management system that are included. A more extensive list of [https://www.rbvi.ucsf.edu/chimerax/docs/embedded.html software embedded in ChimeraX] including packages in other languages (e.g. !AmberTools, ffmpeg, ...) is provided in the documentation. 47 47 48 48 == ChimeraX Toolshed ==