Changes between Version 52 and Version 53 of NeteSOW

Timestamp:

Dec 17, 2020, 4:18:14 PM (5 years ago)

Author:

Tom Goddard

Comment:

--

NeteSOW

@@ -261 +261 @@
 == 12/17/2020 ==
 
-VR session with Uganda worked very well
-
-Let's arrange for Scooter to demo scNetViz to the NIAID folks; see also [https://science.sciencemag.org/content/370/6522/eaaz4910 recent Science paper] in which a Cytoscape app is used to map genetic interactions onto structures in ChimeraX
-
-We are drafting a task list for renewing the contract next year.
-
-Discussion of HubMap and ontologies.
-HubMap data has issues revealed in ChimeraX, like different brightnesses
-and z-planes for different tiles within the intestine data.
-Scooter knows Nils Gehlenborg (Harvard), maybe we could set up a meeting
-to discuss how ChimeraX can contribute to viewing HubMap data using
-capabilities beyond those in the portal. TomG would like more time to
-think about this (what exactly are the "beyond" capabilities: custom,
-in-depth analyses?) before we schedule a meeting.
-
-Eric has implemented getting sequence features from UniProt into ChimeraX,
-available in next daily build
-
-next meeting 1/14
+VR meetings
+ - VR session with Uganda worked very well
+
+Cytoscape for HuBMAP data
+ - Let's arrange for Scooter to demo scNetViz to the NIAID folks; see also [https://science.sciencemag.org/content/370/6522/eaaz4910 recent Science paper] in which a Cytoscape app is used to map genetic interactions onto structures in ChimeraX
+
+Next contract
+ - We are drafting a task list for renewing the contract next year.
+
+HuBMAP visualization
+ - Discussion of !HubMap and ontologies.
+ - !HubMap data has issues revealed in ChimeraX, like different brightnesses and z-planes for different tiles within the intestine data.
+ - Scooter knows Nils Gehlenborg (Harvard), maybe we could set up a meeting to discuss how ChimeraX can contribute to viewing !HubMap data using capabilities beyond those in the portal. TomG would like more time to think about this (what exactly are the "beyond" capabilities: custom,in-depth analyses?) before we schedule a meeting.
+
+HuBMAP anatomical models
+ - Kristen Browne talked about making anatomical organ models with Katy Borner for HuBMAP reference frame for positioning deposited samples.
+ -  Katy has a person working on a VR placement tool.
+ -  BCBB will have all the anatomical models in NIH 3D.
+
+!UniProt features in ChimeraX
+ - Eric has implemented getting sequence features from !UniProt into ChimeraX, available in next daily build
+
+Next meeting 1/14.  Darrell returns January 11.