Changes between Version 48 and Version 49 of NeteSOW

Timestamp:

Nov 19, 2020, 4:08:53 PM (5 years ago)

Author:

Tom Goddard

Comment:

ui-1 contains 46 zero bytes. Usually this is a short text file of about that length. Maybe the buffer values were somehow set to zero before being written.

NeteSOW

@@ -235 +235 @@
 - Phil has tried the script, seems to work well in a few tests, needs to try with more data including edge cases and wider range of sizes
 - The script looks for a recommended contour level for maps from EMDB, but some maps do not have this annotation
-- They will need Chimera 1.15 because of changes in RCSB PDB fetch
+- NIH 3D Print Exchange will need Chimera 1.15 because of changes in RCSB PDB fetch
 - Add new fetches?
   - Crystallography Open Database provides CIF, but ChimeraX does not read small-molecule CIF
-  - ZINC provides formats ChimeraX reads, we will reach out to Shoichet and/or Irwin
+  - ZINC provides formats ChimeraX reads (SDF, MOL2), we will reach out to Shoichet and/or Irwin
 
 VR Meetings:
 - Meghan: we will try a VR meeting with Uganda
-- Victor: ...or with our own low-bandwidth machine
-- the Meeting GUI will be very helpful
-- TomG will investigate lowering the bandwidth requirement by using Messagepack
+- Victor: ...or with our own low-bandwidth test equipment
+- the Meeting GUI is easier than using command, remembers multiple proxy servers
+- TomG will investigate lowering the bandwidth requirement by using !MessagePack library
 - TomG wants to make a science-focused video also to publicize ChimeraX meeting capabilities
-- security issues with meeting (whether a key is required)
 
 Segmentation, Medical Imaging, HuBMAP:
-- re Hubmap, the contract was to investigate it rather than to finish any specific tasks 
+- re Hubmap, the contract was to investigate it rather than to implement specific visualization
 - Kristen: may be too early to work with Hubmap, seems in flux
 - Darrell: would still like to prioritize Hubmap
 - Darrell: then secondarily, medical imaging; make use of ITK somehow? Would be strategic move to incorporate ITK. NIH has made investments in Hubmap and ITK, so using them may help subsequent round of funding.
-- TomG: maybe simple ITK can help with showing segmentations
-- They will invite simple ITK developer(s) to our next meeting
+- TomG: maybe work to make ChimeraX show DICOM simple ITK segmentations
+- They will invite simple ITK developer(s) to our next meeting, Liv and Brad.