Changes between Version 46 and Version 47 of NeteSOW

Timestamp:

Nov 19, 2020, 2:10:05 PM (5 years ago)

Author:

Elaine Meng

Comment:

--

NeteSOW

@@ -211 +211 @@
 3D Pipeline:
 
-- Eric modified the ChimeraX pipeline script to allow specifying which branch to take (small mol, macromol, or map), or if not specified then chosen automatically.  Regardless, the script reports what branch is used.  He put the script on your github several days ago.  Feedback?
+- Eric modified the ChimeraX pipeline script to allow specifying which branch to take (small mol, macromol, or map), or if not specified then chosen automatically.  Regardless, the script reports what branch is used. He put the script on your github a couple of weeks ago.  Feedback?
 
 - Eric is working on porting addcharge to ChimeraX for a more complete implementation of coloring by Coulombic ESP
@@ -233 +233 @@
 
 3D Pipeline:
-- Phil has tried the script, seems to work well in a few tests, needs to try with more data including edge cases and wide range of sizes
+- Phil has tried the script, seems to work well in a few tests, needs to try with more data including edge cases and wider range of sizes
 
 - The script looks for a recommended contour level for maps from EMDB, but some maps do not have this annotation
@@ -248 +248 @@
 - the Meeting GUI will be very helpful
 - TomG will investigate lowering the bandwidth requirement by using Messagepack
+- TomG wants to make a science-focused video also to publicize ChimeraX meeting capabilities
+- security issues with meeting (whether a key is required)
+
+Segmentation, Medical Imaging, HuBMAP:
+- re Hubmap, the contract was to investigate it rather than to finish any specific tasks 
+- Kristen: may be too early to work with Hubmap, seems in flux
+- Darrell: would still like to prioritize Hubmap
+- Darrell: then secondarily, medical imaging; make use of ITK somehow? Would be strategic move to incorporate ITK. NIH has made investments in Hubmap and ITK, so using them may help subsequent round of funding.
+- TomG: maybe simple ITK can help with showing segmentations
+- They will invite simple ITK developer(s) to our next meeting