Changes between Version 90 and Version 91 of Needed Command Functionality

Timestamp:

Jun 8, 2015, 3:05:35 PM (11 years ago)

Author:

Elaine Meng

Comment:

--

Needed Command Functionality

@@ -87 +87 @@
 * smart molecule display
   - IMO, this implies the need for '''preset''' with at least two interactive options: one with all atoms shown and one similar to the smart display; I'd vote for a third one with molecular surface(s) colored to match the corresponding chain's ribbon, possibly transparent
-* '''rangecolor''' or equivalent for color-by-attribute
-  - then '''defattr''' would be useful
-* '''scolor''' or equivalent for color-by-scalar (radial, volume value, ''etc.'') 
-  - logical to merge '''rangecolor''' and '''scolor''', maybe also '''rainbow''', but what's a good name? ...'''rendervalue''' (which could include worms/radii by attr), '''colorscale''', many other possibilities... see [http://www.cgl.ucsf.edu/home/meng/chi2/vcolor.html color-by-value command mockup]
-  - or, even merge with main color command, see [http://www.cgl.ucsf.edu/home/meng/chi2/color.html omnibus color command mockup] (ECM: currently I favor this approach)
+* color-by-attr as in '''rangecolor''', color-by-scalar-field as in '''scolor''', and color sequentially as in '''rainbow'''
+  - '''defattr''' would be useful for reading in custom attributes
+  - logical to merge, but what's a good name? see [http://www.cgl.ucsf.edu/home/meng/chi2/vcolor.html color-by-value command mockup]
+  - or, even merge with main '''color''' command, see [http://www.cgl.ucsf.edu/home/meng/chi2/color.html omnibus color command mockup] (ECM: currently I favor this approach)
 * '''findhbond'''
   - consider option to find salt bridges only