Changes between Version 53 and Version 54 of Needed Command Functionality

Timestamp:

May 14, 2015, 12:47:07 PM (10 years ago)

Author:

Elaine Meng

Comment:

--

Needed Command Functionality

@@ -12 +12 @@
 * '''ribbon''' (suggest replacing with '''cartoon''' and including spline, path smoothing, whether backbone atoms can be shown, and any other whole-chain parameters as options to this command; see [http://www.cgl.ucsf.edu/home/meng/chi2/ribbons.html ribbons writeup])
   - for this release, just ribbons (not cylinders or worms)
-* '''surface''' 
+* '''surface''' solvent-excluded molecular surface
   - see [[SurfaceCategories]] discussion of categories and command design
   - see [http://www.cgl.ucsf.edu/home/meng/chi2/surface.html surface manpage mockup] based on subsequent discussion
@@ -34 +34 @@
 * decide on what kinds of colorspecs are allowed, ''e.g.'' can color names include spaces?
 * set of built-in color names
-* built-in specs '''solvent, ions, ligand, main''' (needed for molecular surface calculations anyway, might as well make them available for command-line use)
+* built-in specs '''solvent, ions, ligand, main, helix, strand, coil''' (needed for molecular surface and ribbon anyway, might as well make them available for command-line use)
 
 == December release ==
@@ -49 +49 @@
 
 Command accoutrements:
-* more built-in specs like ions, ligand, helix, strand, protein, ''etc.''
+* more built-in specs like '''protein, nucleic acid''',''etc.''
 * full atomspecs (see [http://www.cgl.ucsf.edu/home/meng/chi2/frameatom_spec2.html Chimera2 atomspec writeup])