Changes between Version 51 and Version 52 of Needed Command Functionality

Timestamp:

May 14, 2015, 11:54:22 AM (10 years ago)

Author:

Elaine Meng

Comment:

--

Needed Command Functionality

@@ -12 +12 @@
 * '''ribbon''' (suggest replacing with '''cartoon''' and including spline, path smoothing, whether backbone atoms can be shown, and any other whole-chain parameters as options to this command; see [http://www.cgl.ucsf.edu/home/meng/chi2/ribbons.html ribbons writeup])
   - for this release, just ribbons (not cylinders or worms)
-* '''surface''' (see [https://www.rbvi.ucsf.edu/trac/chimera2/wiki/SurfaceCategories surface command and category thoughts]; should include calculation parameters, vertexDensity, visiblePatches)
-  - see [http://www.cgl.ucsf.edu/home/meng/chi2/surface.html surface manpage mockup] based on developer discussion
+* '''surface''' 
+  - see [[SurfaceCategories]] discussion of categories and command design on wiki
+  - see [http://www.cgl.ucsf.edu/home/meng/chi2/surface.html surface manpage mockup] based on subsequent discussion
 * '''repr''', '''ribrepr''', '''ribscale''', '''surfrepr''' (maybe consolidate into a new '''style''' command, generalizing ribbon to cartoon as per [http://www.cgl.ucsf.edu/home/meng/chi2/ribbons.html ribbons writeup], and including pseudobonds; I'm not sure consolidation is better, however, since consolidation makes longer commands, and for such frequently used functionality we need easy-to-type commands)
   - styles for this release include atom/bond '''stick, bs, sphere'''; surface '''solid, mesh'''; and at least a default style or a few possibilities for ribbons/cartoons (I suggest rounded and edged with default scaling, and rounded with licorice scaling, i.e. thin tube)