Changes between Version 48 and Version 49 of Needed Command Functionality


Ignore:
Timestamp:
May 7, 2015, 12:35:00 PM (10 years ago)
Author:
Elaine Meng
Comment:

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  • Needed Command Functionality

    v48 v49  
    1111  - this could control pseudobonds indirectly if they are hidden automatically when endpoint atoms are hidden, but we may want to make it act on them directly, or else '''setattr''' (see below) might be the only way
    1212* '''ribbon''' (suggest replacing with '''cartoon''' and including spline, path smoothing, whether backbone atoms can be shown, and any other whole-chain parameters as options to this command)
     13  - for this release, just ribbons (not cylinders or worms)
    1314* '''surface''' (see [https://www.rbvi.ucsf.edu/trac/chimera2/wiki/SurfaceCategories surface command and category thoughts]; should include calculation parameters, vertexDensity, visiblePatches)
    1415* '''repr''', '''ribrepr''', '''ribscale''', '''surfrepr''' (maybe consolidate into a new '''style''' command, generalizing ribbon to cartoon as per [http://www.cgl.ucsf.edu/home/meng/chi2/ribbons.html ribbons writeup], and including pseudobonds; I'm not sure consolidation is better, however, since consolidation makes longer commands, and for such frequently used functionality we need easy-to-type commands)
    15   - styles for this release include atom/bond '''stick, bs, sphere'''; surface '''solid, mesh'''; and at least a default style or a few possibilities for ribbons/cartoons
     16  - styles for this release include atom/bond '''stick, bs, sphere'''; surface '''solid, mesh'''; and at least a default style or a few possibilities for ribbons/cartoons (I suggest rounded and edged with default scaling, and rounded with licorice scaling, i.e. thin tube)
    1617* '''color''' (leaving color-by-attr '''rangecolor''' and color-by-scalar-field '''scolor''' separate; '''rainbow''' might be merged with those two)
    1718* '''volume''' control over isosurface display (redundancy with show/hide/color etc. OK with me, but should review structure and keywords ''vs.'' the negotiable [http://www.cgl.ucsf.edu/home/meng/chi2/command-structure.html command guidelines])