Changes between Version 41 and Version 42 of Needed Command Functionality

Timestamp:

May 7, 2015, 11:31:32 AM (10 years ago)

Author:

Elaine Meng

Comment:

--

Needed Command Functionality

@@ -9 +9 @@
 * '''open''' (suggest same general syntax as Chimera1, possibly adjusting prefixes; covers both local files and web-fetch)
 * '''display''', '''modeldisplay''' (suggest replacing with '''show/hide''')
-* '''ribbon''' (suggest replacing with '''cartoon''' and including spline, path smoothing, and any other whole-chain parameters as options to this command)
+* '''ribbon''' (suggest replacing with '''cartoon''' and including spline, path smoothing, whether backbone atoms can be shown, and any other whole-chain parameters as options to this command)
 * '''surface''' (see [https://www.rbvi.ucsf.edu/trac/chimera2/wiki/SurfaceCategories surface command and category thoughts]; should include calculation parameters, vertexDensity, visiblePatches)
 * '''repr''', '''ribrepr''', '''ribscale''', '''surfrepr''' (maybe consolidate into a new '''style''' command, generalizing ribbon to cartoon as per [http://www.cgl.ucsf.edu/home/meng/chi2/ribbons.html ribbons writeup], and including pseudobonds; I'm not sure consolidation is better, however, since consolidation makes longer commands, and for such frequently used functionality we need easy-to-type commands)
@@ -51 +51 @@
 * '''rangecolor''' or equivalent for color-by-attribute
 * '''scolor''' or equivalent for color-by-scalar (radial, volume value, ''etc.'') 
-  - logical to merge '''rangecolor''' and '''scolor''', maybe also '''rainbow''', but what's a good name? stick with rangecolor, or something else like colorscale, colormap, colorvalue, valuecolor, valcolor ???
+  - logical to merge '''rangecolor''' and '''scolor''', maybe also '''rainbow''', but what's a good name? stick with rangecolor, or something else like colorscale, colormap, colorvalue, valuecolor, valcolor, colorbyvalue ???
   - color-by-scalar might only apply to surfaces and atoms
 * '''sop hideDust''' or equivalent