Changes between Version 62 and Version 63 of NTTData


Ignore:
Timestamp:
Nov 4, 2021, 1:35:09 PM (4 years ago)
Author:
Elaine Meng
Comment:

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  • NTTData

    v62 v63  
    401401Some discussion of !AlphaFold vs. !RosettaFold.  Yifan Cheng tried connecting proteins with a linker and using !AlphaFold but that did not predict the dimer correctly.
    402402
     403== 10/21/2021 ==
     404
     405Phil, Philip, Darrell; Scooter, Elaine, Eric, TomG, Zach, Greg
     406
     407What did they want to know about cryoEM?  Workflow issues.  Scooter: we should connect you with the UCSF Macromolecular Structure Group people including Matt Harrington. Darrell gave a EM crash course precently, including analogies to SEM, TEM, and cryoEM. Most structure "determination" includes some subjectivity.
     408
     409Scooter: need to start thinking about the next year's contract soon. Let's start brainstorming in some meeting(s) soon, including what we did and didn't do from the previous contracts. Darrell: sounds good. Don't worry too much about the specifics, since plans have to evolve when other projects (E.g. hubmap) don't progress as expected.
     410
     411Phil: By the way, I've seen others using ChimeraX recently, including for getting alphafold models. Are there any ongoing issues with the pipeline?  Philip: not much, they have been resolved with fixes in daily build. Still have problems with FTP of EMDB maps.  TomG: FTP is much better for general user populace (more reliable and faster), but I can add an option to use HTTPS instead. Discussion of whether recent changes for pipeline can go into 1.3 release or not... Eric will have to check on that.