Changes between Version 53 and Version 54 of NTTData
- Timestamp:
- Sep 23, 2021, 1:45:11 PM (4 years ago)
Legend:
- Unmodified
- Added
- Removed
- Modified
-
NTTData
v53 v54 348 348 349 349 Phil has been testing Eric's script on a variety of cases. Macromolecular pipeline (medium size) would like the default-sized ribbons for the nonprinting case, but also thickened ribbons with struts for the printing case. Small molecules ball-and-stick and CPK are fine for nonprinting, but sticks need to be thickened for the printing case. Few small glitches, one mol2 file failed, will send details. TG: have you tried tube helices? Phil: will take a look. We're not sure how they interact with struts. Other glitches: one virus color-by-chain didn't work, PDB file for zika virus capsid needs to get expanded to whole capsid; will send details. There was also a "volume" command issue but it may be fixed now. 350 351 When will your new 3D pipeline be publicly available? Phil: we may make a website that's not linked to anything but send people its URL for early access. Maybe early next year. 352 353 Phil: for visualization purposes, maybe we would be interested in all of an NMR ensemble as opposed to our current approach of using the first model only for everything. 354 355 Phil: EMDB will be changing their metadata schema. TomG: ChimeraX isn't using it yet anyway. Eric: the 3d pipeline script does use the recommended contour level. TomG: are there other interesting pieces of info? Phil: the corresponding PDB entry. TomG: maybe also resolution. 356 357 Phil: if you didn't yet, take a look at the stuff we prepared for the H3 Africa workshop.