Changes between Version 123 and Version 124 of NTTData


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Timestamp:
Jun 9, 2022, 1:59:38 PM (3 years ago)
Author:
Elaine Meng
Comment:

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  • NTTData

    v123 v124  
    759759Phil: are ChimeraX-calculated values saved somehow? Eric: currently, the script sends them to standard-out with a standardized prefix to facilitate grepping the lines. Could be changed if needed.
    760760
    761 TomG: !AlphaFold update
     761TomG: new "alphafold contacts" command to draw pseudobonds as explained in https://www.rbvi.ucsf.edu/chimerax/data/alphafold-contacts-jun2022/afcontacts.html
     762
     763Phil: what about similar pseudobonds for contacts?  Elaine: can be done with "contacts" command but we don't have anything to color them continuously by length yet.  Scooter: might be interesting to show histogram by length with "crosslinks histogram".  Elaine: clicking a histogram bar interacts with corresponding pseudobonds.
     764
     765Zach: has reached out to Jason Rubinstein, he will take a look at latest bundle and get back to us
     766
     767Meghan: we still need to give feedback on where the buttons are on different VR hand-controllers, for better mapping to the cone display in the headset. TomG: we currently use two different layouts, one for Vive and one for Oculus Rift.  So more could be added.