Changes between Version 11 and Version 12 of NIAID2024

Timestamp:

May 9, 2024, 1:47:42 PM (18 months ago)

Author:

Elaine Meng

Comment:

--

NIAID2024

@@ -82 +82 @@
 
 == Meeting Minutes ==
+
+== 5/9/24 ==
+
+Elaine, Eric, Zach, Scooter; Phil, Meghan, Mike Bopf, Bhinnata, Andi Bueckle, Kristen Browne
+
+Discussion of preparations for their poster presentation next week. Wanted to use VR along with the poster, but had an issue trying to set up their own wifi for "vr meeting" and alignment of two sessions. Phil ended up using his phone as a hotspot.
+
+Phil: we had internal discussions on what we need for alphafold presets for NIH3D.  Shows a table summarizing the names, display styles, coloring, with and without high confidence (probably pLDDT >= 50 although that may change).  Also shares the table as Word and PDF docs, Elaine downloaded and emailed to Eric.
+
+Eric demonstrates the first two alphafold presets that he'd already worked up, ribbons colored by pLDDT for viz and for printing.
+
+Phil: these alphafold presets are only for quick-submit, i.e. user just specifies uniprot ID and we do the fetch.  Eric: better to give us (the script) the uniprot ID than the structure, so that the fetch can also get the corresponding PAE, etc. Elaine: use "alphafold fetch" with "pae true" and then another command "alphafold pae" with "colorDomains true". Phil: Mike, we will be getting the additional PAE file (JSON) and it needs to be accessible to ChimeraX.   
+
+Scooter: we haven't gotten an official confirmation of the contract.  We were given the nod to work "at risk" but that was a while ago. Meghan: I will touch base with Nada and see what information I can get on status. Scooter: or maybe UCSF has just failed to notify us.
+
+Some discussion of NIAID contract and funding opportunities for Andi.
 
 == 4/25/24 ==