Changes between Version 26 and Version 27 of NIAID2022


Ignore:
Timestamp:
Oct 27, 2022, 2:10:21 PM (3 years ago)
Author:
Elaine Meng
Comment:

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  • NIAID2022

    v26 v27  
    6767Kristen: some workflows are hanging, maybe within a preset? Have been submitting ChimeraX tickets with long Log to help diagnose the problem.
    6868
    69 Phil: have been asking about making ChimeraX read X3D; it currently exports that format but does not read/display it. Greg: not impossible but would take a lot of work; perhaps easier would be reading the VRML subset, but even that would take some time.  Elaine: didn't Chimera include an x3d2vrml script? Would that help?
    70 
    71 Phil: have been using 3dqsar.com that does ComFa now that the Tripos patent exclusivity has ended. Can output cube files and display in ChimeraX, which is nice.
     69Phil: have been asking about making ChimeraX read X3D; it currently exports that format but does not read/display it. Greg: not impossible but would take a lot of work; perhaps easier would be reading the VRML subset, but even that would take some time.  Elaine: didn't Chimera include an x3d2vrml script? Would that help?  Greg: maybe; worth trying.
     70
     71Phil: have been using 3dqsar.com that does CoMFA (comparative molecular field analysis) now that the Tripos patent exclusivity has ended. Can output cube files and display in ChimeraX, which is nice.
    7272
    7373Phil: may consider adding reading VRML to ChimeraX as a goal in our next contract. Greg: reading small molecule CIF could be another feature to add to a future contract.  Maybe you can use openBabel to convert small molecule CIF into SDF.
    7474
    7575Phil: any updates on the timing of the 1.5 release? TomG: we estimate at least 2 weeks away, as various bug reports have come in since the candidate.
     76
     77Kirsten: we are trying to get from GLB with textures to X3D with textures. We have lots of fancy GLB with animations, etc.
     78
     79Phil: what about DAE?  Elaine: currently ChimeraX can read it but not write it. TomG: we could add writing DAE; we had concentrated on GLB.  Kristen: writing DAE would be useful. We do need GLB for web, so it was not a mistake to prioritize it.
     80
     81Phil: what about FBX? Kristen: proprietary, owned by Maya.
     82
     83Discussion of VR latency when using cloud service.  TomG: probably would not work well in many cases. Many may prefer to use Quest Nano (standalone) and leave ChimeraX out of the equation. Phil: prefer ChimeraX for cases where you want to go in and out of VR, using desktop part of the time.
    7684
    7785== 10/13/2022 ==