Changes between Version 14 and Version 15 of NIAID2022

Timestamp:

Sep 1, 2022, 2:00:46 PM (3 years ago)

Author:

Elaine Meng

Comment:

--

NIAID2022

@@ -77 +77 @@
 African collabs using Enduvo, so much of the work is getting ChimeraX GLB into that program.  Currently gives error on import "not fully supported," recommends using gltf version 2.0. TomG: I thought that's what we were producing. Greg: is it something about texture coloring? Phil: surface colors are showing in Enduvo but not ribbon/atom colors, which are shown as white. TomG: maybe our single coloring such as used for atoms is not recognized. May need to use per-vertex colors instead. TomG: do they offer a free trial so we can try it? Have you noticed other problems besides color? Phil: no.
 
-Phil: another collaborator wants to make an image with something like HOLE.  Elaine: unfortunately Chimera/X doesn't have a builtin feature like that.  Eric: there is a MOLE plugin for Chimera, see plugins page.  Elaine: There's a MoleOnline server that makes output for Chimera 
+Phil: another collaborator wants to make an image with something like HOLE.  Elaine: unfortunately Chimera/X doesn't have a builtin feature like that.  Eric: there is a MOLE plugin for Chimera, see plugins page.  Elaine: There's a !MoleOnline server that makes output for Chimera 
 Moleonline server https://mole.upol.cz/
 Moleonline image from Chimera
 https://www.rbvi.ucsf.edu/chimera/related/mole1bl8.png
 
-Eric: latest update is that there is a dockprep command.  Phil: how do you parametrize ligands?  Elaine/Eric: Ambertools 20 Antechamber, GAFF types and choice of Gasteiger or AM1-BCC charge calculation.
+Eric: latest update is that there is a dockprep command.  Phil: how do you parametrize ligands?  !Elaine/Eric: Ambertools 20 Antechamber, GAFF types and choice of Gasteiger or AM1-BCC charge calculation.
 
 TomG: cryoDRGN is an AI program to figure out heterogeneity in EM data.  Just started adding a tool in ChimeraX to look at the output. It's in R01 proposal but we don't know for sure whether the renewal will be funded or for how much, maybe will find out by the end of the year. (shares screen showing clicking on the UMAP and displaying the corresponding density map)