Changes between Version 10 and Version 11 of NIAID2022

Timestamp:

Aug 18, 2022, 1:42:06 PM (3 years ago)

Author:

Elaine Meng

Comment:

--

NIAID2022

@@ -59 +59 @@
 = Meeting Minutes =
 
+== 9/1/2022 ==
+
 == 8/18/2022 ==
+
+Phil, Darrell (at end); Zach, Eric, Elaine, Greg, TomF
+
+Phil: going to Uganda (along with Darrell and Meghan) in a few weeks, would like to show VR, and any new stuff with DICOM.  Will be here for our next meeting (9/1), but gone for the one after that.
+
+Zach: have been refactoring DICOM bundle, have been working on a DICOM browser to show the hierarchy with option to show full metadata.  We have reached out to local radiologist, trying to set up a meeting to show in VR, but not done yet.
+
+Phil: NIH3D any recent issues?  Eric: haven't heard from Michal since last meeting. Elaine: we've been working on axes/planes/centroids.  Eric: and Dock Prep, but still not done.
+
+Elaine: do you (or NIH3D) represent the membrane?  Could get the PDB from the OPM (orientation of proteins in membranes) database, which represents the membrane as a bunch of singleton atoms in a plane.  I can send an example or two using "define plane" and/or "molmap" to make those atoms into solid surfaces.
+
+Phil: my other question was for TomG, but I'll ask anyway... files from alphafold get saved in downloads but folders are just named prediction_1, prediction_2.  Would like to get a more descriptive folder name so it would be easier to tell which modeling job was which. [shares screen]  especially when I click Error Plot and get a dialog asking for the location of the file -- I don't know which one will go with the structure.  Would be nice if it asked for a job name beforehand, say when you click Predict, and then name the folder with that.  Elaine: I will make a ticket and put you as the reporter.
+
+Darrell: next meeting, I invited Nada Midani, program manager.  TomF: unfortunately Scooter will not be here. Darrell: maybe will have to wait until later in September for Nada to meet Scooter.  Phil: we will still have a meeting 9/1.
+
+Darrell: two quick questions. (1) is alphafold db version 3 hooked up to ChimeraX?  Elaine: yes, may need daily build, see "version" option of alphafold fetch and alphafold search. (2) ChimeraX use for cryoET?  yes, we see several citations, and there is a new amazing huge bundle for working with cryoET on the Toolshed now, ArtiaX. TomF: and they have documentation!
 
 == 8/4/2022 ==