Changes between Version 3 and Version 4 of MolGraphics

Timestamp:

Jan 7, 2015, 1:56:09 PM (11 years ago)

Author:

pett

Comment:

--

MolGraphics

@@ -1 +1 @@
 = Molecule graphics attributes for Chimera 2, based on Chimera 1 =
 
-These are graphical molecular attributes that should be part of the C++ molecule classes.  This list is based on Chimera 1 and is meant as a starting point for discussing possible changes in Chimera 2.
+These are graphical molecular attributes that should be part of the C++ molecule classes or their base classes.  This list is based on Chimera 1 and is meant as a starting point for discussing possible changes in Chimera 2.
 
 "*" indicates something we may change in Chimera 2.
@@ -7 +7 @@
 == Atom ==
 {{{
- display (true/false)
  hide (true/false, is atom shown when ribbon style shown)
-
- drawMode (Dot, Sphere, EndCap, Ball)
-
- color
-
- label (text string for 3d label)
- labelOffset (xyz position relative to atom)
- labelColor
- minimumLabelRadius (float)
 
  *surfaceDisplay (drop this, visibility of surface per-atom)
@@ -23 +13 @@
  *surfaceOpacity (drop this, used for color by atom)
  *surfaceCategory (drop this? categories will be like other named selectors?)
-
- *vdwPoints (drop this)
- *vdwColor (drop this)
 
  *Thermal ellipsoids for atoms -- in Python in Chimera 1, maybe should be Molecule attributes
@@ -40 +27 @@
 }}}
 
-== Bond ==
+== !BaseSphere (base class for Atom) ==
+{{{
+ drawMode (Dot, Sphere, EndCap, Ball)
+
+ *vdwPoints (drop this)
+ *vdwColor (drop this)
+}}}
+
+== Connectible (base class for !BaseSphere) ==
+{{{
+ display (true/false)
+
+ color
+
+ label (text string for 3d label)
+ labelOffset (xyz position relative to atom)
+ labelColor
+ minimumLabelRadius (float)
+
+}}}
+
+== Connection (base class for Bond/!PseudoBond) ==
 {{{
  display (true/false)
@@ -49 +57 @@
  color
  halfbond (color each half of bond to match near atom)
-
- label (text)
- labelColor
- labelOffset (xyz position relative to bond center)
-}}}
-
-== !PseudoBond (same attributes as Bond) ==
-{{{
- display (true/false)
-
- drawMode (wire, stick, spring)
- radius
-
- color
- halfBond (color each half of bond to match near atom)
 
  label (text)