Changes between Version 19 and Version 20 of MSC2019Deliverables

Timestamp:

Oct 25, 2019, 2:57:43 PM (6 years ago)

Author:

Tom Goddard

Comment:

--

MSC2019Deliverables

@@ -42 +42 @@
     - [[span(style=color: #00AA00, Volume Eraser GUI and VR mode added. )]]
     - [[span(style=color: #00AA00, GUI color and size controls for markers placed on maps . )]]
+    - [[span(style=color: #00AA00, Initial tests of new EMDB segmentation file format. Handles surface and index map type segmentations. )]]
   i. [[span(style=color: #00AA00, General VR user interface improvements. These make all desktop GUI interfaces easier to use in VR. )]]
     - [[span(style=color: #00AA00, Menus and popup windows now supported in VR. )]]
     - [[span(style=color: #00AA00, Every tool is its own movable, resizable and closable panel. )]]
+    - [[span(style=color: #00AA00,  A panel of recent file thumbnails is now available in VR, accessed via toolbar. )]]
     - [[span(style=color: #00AA00, Improved zooming to avoid models receding in distance. )]]
-    - [[span(style=color: #00AA00,  Oculus controller button layout. )]]
-    - [[span(style=color: #00AA00,   Oculus thumbstick modes for zoom, rotate, map series. )]]
+    - [[span(style=color: #00AA00, Raised buttons on hand controller cones are now customized for Vive and Oculus controllers. )]]
+    - [[span(style=color: #00AA00,   Oculus thumbstick support added used by modes for zoom, rotate, map series. )]]
  b. Measure and display distance between two specified points in space in VR, both molecular models and medical images.
-  - [http://rbvi.ucsf.edu/chimerax/docs/user/tools/mousemodes.html#tapemeasure Tape measure VR and mouse mode added.  For maps only currently.]
+  - [[span(style=color: #00AA00, [http://rbvi.ucsf.edu/chimerax/docs/user/tools/mousemodes.html#tapemeasure Tape measure] VR and mouse mode added.  For maps only currently. )]]
  c. Investigate and optionally prototype control of VR sessions by speech recognition, using a controlled vocabulary and grammar.  This will support better accessibility for disabled users, e.g., users with limb differences who would have trouble with some aspects of the VR hand controllers.
 2. Extend medical imaging data visualization and analysis (Tom 348 hours, Elaine 87 hours)
@@ -74 +76 @@
    - [[span(style=color: #00AA00,  [http://rbvi.ucsf.edu/chimerax/docs/user/index.html ChimeraX User Guide at the RBVI website] **note to Scooter** because viewdockx was used as the test for the future documentation reorganization, the links to ViewDockX tool and viewdockx command help are broken in this website copy. The downloaded User Guide shown from ChimeraX help menu does not have this issue. )]]
   a. Written user guides and tutorials shall be available as an HTML page and/or a downloadable PDF.
-   - [[span(style=color: #00AA00,  [http://www.rbvi.ucsf.edu/chimerax/tutorials.html ChimeraX tutorials index ] ...includes [https://www.rbvi.ucsf.edu/chimerax/data/rml-sep2019/synuclein.html Alpha-synuclein fibrils ChimeraX tutorial for Rocky Mountain Laboratories workshop. September 2019.] and [https://www.rbvi.ucsf.edu/chimerax/data/rml-sep2019/proteasomes.html EM tomography ChimeraX tutorial looking at proteasomes around aggregated fibrils in neurons for Rocky Mountain Laboratories workshop. September 2019.] )]]
+   - [[span(style=color: #00AA00,  All new features described above for cryoEM documented in User's Guide. )]]
+   - [[span(style=color: #00AA00,  New cryoEM [http://www.rbvi.ucsf.edu/chimerax/tutorials.html ChimeraX tutorials] made for Rocky Mountain Lab workshop.] )]]
+     1. [https://www.rbvi.ucsf.edu/chimerax/data/rml-sep2019/synuclein.html Alpha-synuclein fibrils]
+     1. [https://www.rbvi.ucsf.edu/chimerax/data/rml-sep2019/proteasomes.html EM tomography of proteasomes around aggregated fibrils in neurons.]
 5. Project planning, administration, and reporting (Tom 87 hours, Scooter 174 hours)
   a. A project schedule, implementation plan, and documentation plan will be provided.