Changes between Version 10 and Version 11 of GrantAims2


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Timestamp:
Jan 23, 2023, 3:22:12 PM (3 years ago)
Author:
Tom Goddard
Comment:

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  • GrantAims2

    v10 v11  
    11= ChimeraX Grant Funding Specific Aims =
    22
    3 October 21, 2021
     3January 23, 2023
     4
     5==  R01 2022-2026 - ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale Modeling ==
     6
     7* Aim 1: Interactive visualization and analysis platform (ChimeraX)
     8  - 1A: Analysis capabilities (.45 FTE)
     9    - Prepare structures for docking/modeling.
     10    - Sequence-structure analysis.
     11    - Dimensionality reduction.
     12  - 1B: Dissemination of results (.45 FTE)
     13    - Animations.
     14    - New glycan depictions.
     15    - Improved interoperability with wwPDB repositories.
     16* Aim 2: Tools for electron microscopy of molecular assemblies and cells.
     17  - 2A: Developments for electron microscopy of molecular assemblies (.35 FTE)
     18    - Machine learning structure predictions.
     19    - Visualization of molecular conformational heterogeneity using machine learning.
     20    - Interactive molecular dynamics for fitting atomic models in maps.
     21    - Faster map contouring and masking.
     22    - Additional building and validation tools.
     23  - 2B: Developments for electron tomography of cells (.53 FTE)
     24    - Improved volumetric visualization using lighting.
     25    - Visualizing, quantifying, and creating segmentations.
     26    - Analysis tools for subtomogram averaging.
     27    - Virtual reality visualization of tomograms.
     28* Aim 3: Provide a diverse software foundation enabling labs around the world to develop and distribute new molecular and cellular structure analysis software.
     29  - 3A: New capabilities for plugin development (.35 FTE)
     30    - A standard platform for machine-learning algorithms.
     31    - Simple programming to access web services.
     32    - Providing complex calculations with good user experience (long-running calculations).
     33    - Programming examples.
     34  - 3B: Expanding the distribution of plugins (.17 FTE)
     35    - Utilizing the PyPi and Anaconda Python package managers.
     36    - Cloud-based building of ChimeraX and plugins.
     37
    438
    539==  R01 2018-2022 - ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale Modeling ==