User Functionality

What initial areas of Chimera 2 functionality should we develop to allow users to do productive work more easily than with Chimera 1?

There is a ​list of deas in Hydra feature slides from March 2014.

Areas

• Scenes
• Presentation images
• cellPACK / multiscale models
• Multi-Domain Assembler (port?)
• Comparitive structure analysis (clustering, morphing, showing differences)
• Optical microscopy 3d time series
• Cross-links and EM, Jan Kosinski EMBL, IMP, Rosetta
• Docking results analysis, ViewDock
• Small ligand binding analysis (pocket surfaces, areas, hydrogen bonds, ...)
• Evaluating 3A EM maps and atomic models
• Map fitting
• Map segmentation, Segger
• Molecular dynamics