Changes between Version 2 and Version 3 of Dev2024-8-12


Ignore:
Timestamp:
Aug 12, 2024, 3:59:59 PM (15 months ago)
Author:
Tom Goddard
Comment:

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  • Dev2024-8-12

    v2 v3  
    1818= Discussion =
    1919
     20* chimerax-prereqs git repository
     21  - Zach trying to allow access to our ChimeraX third party packages currently only on plato, when plato is down.
     22  - Encounters this problem trying to due github builds of the ChimeraX PyPi wheel where plato does not respond.
     23  - The third party packages are being accessed through a cxtoolshed.rbvi.ucsf.edu.  May be more reliable if we use www.rbvi.ucsf.edu/chimerax/www/data.
     24
     25* Toolshed ScholAR bundle update failing
     26  - Some toolshed problem is preventing Piet from uploading a new version of the bundle.
     27  - Greg says franklin was not running mail server so the newly submitted bundle tried to email the submitter that it succeeded and that failed.
     28  - Greg said subsequent uploads of the same version found the file from the previous upload and tried to make a new name, probably leading to further problems.
     29  - Greg will get this working.
     30
     31* Numpy 2
     32  - Numpy updated from major version 1 to 2 in June, the first major update in over 15 years.
     33  - We will probably wait until ChimeraX 1.10 to look at updating to numpy 2 since many of the PyPi packages we depend on use numpy and they will have to update to numpy 2.
     34
     35* Docutils
     36  - Eric reverted docutils update to get ChimeraX license on download page working.
     37  - License was missing because docutils command-line program rst2html was missing.  It converted the RST markup license file to html.
     38  - Greg has figured out how the new docutils package provides access to rst2html and may switch to using the new mechanism.
     39
     40* ChimeraX active user statistics
     41  - Eric is restoring some web logs from backups so Greg can extract active user info based on ChimeraX toolshed update queries.
     42  - Greg is using both toolshed update checks and also the ChimeraX web services check for new ChimeraX versions to count unique user ids and platforms.
     43  - Greg will talk about this at group meeting next week.
    2044
    2145--------------------------
    2246= Action Items =
    2347
    24 * Zach, ChimeraX 1.7.1 !PyPi package fails to import #15650
    25 * ~~Zach fix MACOSX_DEPLOYMENT_TARGET for bundle builder cythonize() by putting it in environment.~~