Changes between Version 1 and Version 2 of Dev2024-2-26


Ignore:
Timestamp:
Feb 26, 2024, 4:22:20 PM (20 months ago)
Author:
Tom Goddard
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • Dev2024-2-26

    v1 v2  
    2020= Discussion =
    2121
     22* NIH visit
     23  - Ribbon worms added to NIAID statement of work.
     24  - Pass-through VR video for ChimeraX added to SOW.
     25  - Wall touch screen had very wide 3:1 aspect not ideal for ChimeraX, but having tools on both left and right side helped.  Command-line in side panel helped prevent it from being hidden by Windows task bar at bottom of screen.
     26  - Discussed ThinLinc virtual machine service at NIAID that allows using ChimeraX via web browser linux remote desktop.  Had Nvidia A100 80 GB GPU!
    2227
     28* Eric work in progress
     29  - Added join models with non-peptide bonds.
     30  - Made table widget able to save comma-separated values file.
     31  - Finished SPICE database idatm typing.  Next Tristan's people will train neural net to produce OpenMM parameterization.
     32  - Have 30 garbage collection crashes in 1.7 reported.  Have simple dipeptide + coulombic + close + garbage collection test case that crashes.  Appears to be related to chains or sequences since pubchem molecules don't crash. Still trying to locate code that causes crash.
     33  - Starting ChimeraX with 2 screens in windows when last chimerax size was large can lead to frozen, unmovable ChimeraX.  Debugged and put in work-arounds for this.
     34  - Updated Mac to AmberTools23 yesterday.  Library loader paths wrong so not working in daily build, also broke Mac notarization.  Will revert today to AmberTools20 until loader paths can be fixed.
     35
     36* Tom work in progress
     37  - Will test vmtouch to keep sequence databases in memory on crick for multiple sequence alignment server.
     38  - Need to fix meeting bug in LookSee VR with hand tracking.
     39  - Discussing biology projects with a few NIAID researchers.
     40
     41* Greg work in progress
     42  - Recovering bad blocks on wynton beegfs that resulted from last year's disk failures.  Will allow reusing spacing and not count toward user disk quota.
     43  - Wynton may add visualization nodes where user could run ChimeraX on wynton to view data on wynton without copying data to local machine for visualization.
     44
     45* Zach work in progress
     46  - Small group of 5 at medical imaging tutorial at NIAID, good discussions.
     47  - One user interested in spatial genomics visualization.  Hope to get data from them.
     48  - At NIAID discussed putting ChimeraX medical imaging into a bundle and also providing separate ChimeraX UI tailored to medical imaging.
     49
     50 
    2351--------------------------
    2452= Action Items =