Changes between Version 2 and Version 3 of Dev2022-5-15


Ignore:
Timestamp:
May 15, 2023, 4:24:04 PM (2 years ago)
Author:
Tom Goddard
Comment:

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  • Dev2022-5-15

    v2 v3  
    2222= Discussion =
    2323
     24* Update ChimeraX to Python 3.11
     25  - Zach will try compiling ChimeraX for Python 3.11 using a branch he made months ago.
     26  - Should test building on Mac ARM/Intel, Linux and Windows before making the move to 3.11.
     27  - Tinyarray, pyopengl-accelerate and tables may need to be compiled by us.
     28
     29* ChimeraX library
     30  - User asked on mailing list about using ChimeraX in notebook (possibly Google Colab).
     31  - Zach has initial version of library with gui code removed.
     32  - Need examples and documentation to use the library.
     33  - Might release initially just for linux built for one Python version.
     34  - CZI grant funding library ends Aug 1, 2023.  Probably will ask for extension.  But initial library should be released before then.
     35
     36* Plato update to Rocky 8
     37  - Power outage Tuesday night 11 pm to Wed 6 am.
     38  - Plan is to switch to Rocky 8 after outage.
     39
     40* mmCIF out of memory errors
     41  - Got another report with user email, but no reply from any user yet.
     42  - Greg has added a sanity check when allocating size of memory mapped file.
     43  - Greg changed error message so it is distinct from system out of memory message.
     44
     45* Memory leak opening and closing atomic models
     46  - Eric solved biggest memory leak opening and closing atomic models.
     47  - Looking for source of next biggest leak.
     48  - Discussed flushing in-memory ligand cache in mmCIF reader so those don't accumulate when loading all PDB models.
     49
     50* ChimeraX builds with Github actions
     51  - Might be troublesome accessing licensed PyQt from could machine.
    2452
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