Changes between Version 544 and Version 545 of ChangeLog

Timestamp:

Oct 1, 2025, 12:53:07 PM (2 weeks ago)

Author:

Elaine Meng

Comment:

--

ChangeLog

@@ -3 +3 @@
 This log includes significant new features of interest to users. Smaller enhancements, minor feature additions, and minor bug fixes are usually not included. Dates are approximate.
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-October 2, 2025: ** Minimization ** - The [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/minimize.html minimize] command minimizes structures using the [https://openmm.org OpenMM] molecular simulation library.
-
-August 20, 2025: ** Batch ligand binding predictions ** - Predict binding of tens or hundreds of ligands to protein complexes using [https://www.rbvi.ucsf.edu/chimerax/data/boltz-apr2025/boltz_help.html#ligands Boltz 2 in ChimeraX]. Demonstration [https://youtu.be/h06yOBcaOqc video].
-
-August 12, 2025: ** Chirality ** - The [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/chirality.html chirality] command reports the chirality of stereo centers to the Log.  There are some caveats, as mentioned in the linked help page.
-
-July 30, 2025: ** Save MD plots ** - saving the plot to an image file in a variety of formats available from the plot dialog's context menu.
+October 2, 2025: ** General minimization ** - the [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/minimize.html minimize] command energy-minimizes atomic structures, including nonstandard residues such as ligands, using [https://openmm.org OpenMM]
+
+August 20, 2025: ** Batch ligand-binding predictions ** - Predict binding of tens or hundreds of ligands to protein complexes using [https://www.rbvi.ucsf.edu/chimerax/data/boltz-apr2025/boltz_help.html#ligands Boltz 2 in ChimeraX]. Demonstration [https://youtu.be/h06yOBcaOqc video].
+
+August 12, 2025: ** Report chirality ** - the [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/chirality.html chirality] command reports the chirality of stereocenters to the Log; see [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/chirality.html limitations...]
+
+July 30, 2025: ** Save MD plots ** - [https://rbvi.ucsf.edu/chimerax/docs/user/commands/coordset.html#slider MD plots] can be saved to an image file using the plot dialog's context menu
 
 July 24, 2025: ** Boltz 2 structure prediction ** - structure prediction of proteins, nucleic acids, and small-molecule ligands, with affinity prediction (not available in the previous Boltz 1); [https://www.rbvi.ucsf.edu/chimerax/data/boltz-apr2025/boltz_help.html details...]