Changes between Version 503 and Version 504 of ChangeLog

Timestamp:

Nov 13, 2024, 12:35:45 PM (11 months ago)

Author:

Elaine Meng

Comment:

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ChangeLog

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 This log includes new features of interest to users.  Minor feature improvements and minor bug fixes are usually not included. Dates are approximate.
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+November 7, 2024: ** Sequence region annotations** - the sequence [http://www.rbvi.ucsf.edu/chimerax/docs/user/tools/sequenceviewer.html#regions Region Browser] now has a Details column for !UniProt feature annotation specifics (type of covalent modification, mutation effect, ''etc.'')
 
 November 1, 2024: ** Tool docking ** - most tools are now prohibited from docking into the top or bottom of the main window, to try to prevent the mayhem that results from accidentally docking a tool into the toolbar area.
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 October 23, 2024: ** Find Cavities ** - new [http://www.rbvi.ucsf.edu/chimerax/docs/user/tools/findcavities.html Find Cavities] tool and [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/kvfinder.html kvfinder] command for identifying pockets in atomic structures
 
-October 15, 2024: ** Foldseek search and similar structures analysis ** - [http://www.rbvi.ucsf.edu/chimerax/docs/user/tools/fold.html Foldseek (Similar Structures)] tool and associated commands ([http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/foldseek.html foldseek], [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/similarstructures.html similarstructures]) for finding and analyzing large numbers of similar protein structures, showing them in 3D as backbone traces and in 2D as sequence alignments or reduced-dimensionality (UMAP) scatter plots clustered by conformation
+October 15, 2024: ** Foldseek search and similar structures analysis ** - [http://www.rbvi.ucsf.edu/chimerax/docs/user/tools/foldseek.html Foldseek (Similar Structures)] tool and associated commands ([http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/foldseek.html foldseek], [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/similarstructures.html similarstructures]) for finding and analyzing large numbers of similar protein structures, showing them in 3D as backbone traces and in 2D as sequence alignments or reduced-dimensionality (UMAP) scatter plots clustered by conformation
 
 September 25, 2024: ** Nucleotides ** - fixed orientation (and consequently position) of special representations