| | 14 | October 15, 2024: ** Foldseek search and similar structures analysis ** - [http://www.rbvi.ucsf.edu/chimerax/docs/user/tools/fold.html Foldseek (Similar Structures)] tool and associated commands ([http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/foldseek.html foldseek], [http://www.rbvi.ucsf.edu/chimerax/docs/user/commands/similarstructures.html similarstructures]) for finding and analyzing large numbers of similar protein structures, showing them in 3D as backbone traces and in 2D as sequence alignments or reduced-dimensionality (UMAP) scatter plots clustered by conformation |