Changes between Version 337 and Version 338 of ChangeLog


Ignore:
Timestamp:
Mar 9, 2022, 5:14:50 PM (4 years ago)
Author:
Tom Goddard
Comment:

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  • ChangeLog

    v337 v338  
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     7March 9, 2022: **Updated !AlphaFold database** - alphafold match and search now use the January 2022 [https://alphafold.ebi.ac.uk/faq third release] of the EBI !AlphaFold database adding proteins related to neglected tropical disease and antimicrobial resistance.  The !AlphaFold database now has 1 million structures.
     8
    79February 11, 2022: **Alternate residue numberings** - biopolymer structures from the [https://www.wwpdb.org wwPDB] can be switched between the residue numberings
    810[https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Items/_atom_site.auth_seq_id.html provided by the depositor] (**author**, initial default), [https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Items/_atom_site.label_seq_id.html used internally by the PDB] (**canonical**), or in the [https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/struct_ref.html UniProt sequence] (**uniprot**). This can be done by using [https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/setattr.html setattr] to change the [https://www.rbvi.ucsf.edu/chimerax/docs/user/attributes.html#model res_numbering] model attribute. Example: **setattr !#1 structure  res_numbering uniprot**