Changes between Version 336 and Version 337 of ChangeLog

Timestamp:

Feb 10, 2022, 12:57:40 PM (4 years ago)

Author:

Elaine Meng

Comment:

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ChangeLog

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-February 9, 2022: **Alternate residue numberings** - you can switch between the residue numbering [https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Items/_atom_site.label_seq_id.html used internally by the PDB], [https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Items/_atom_site.auth_seq_id.html provided by the depositor], or in the [https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/struct_ref.html UniProt sequence] with the command "setattr #(model number) st res_numbering canonical/author/uniprot".  "Author" is the one shown by default.
+February 11, 2022: **Alternate residue numberings** - biopolymer structures from the [https://www.wwpdb.org wwPDB] can be switched between the residue numberings
+[https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Items/_atom_site.auth_seq_id.html provided by the depositor] (**author**, initial default), [https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Items/_atom_site.label_seq_id.html used internally by the PDB] (**canonical**), or in the [https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/struct_ref.html UniProt sequence] (**uniprot**). This can be done by using [https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/setattr.html setattr] to change the [https://www.rbvi.ucsf.edu/chimerax/docs/user/attributes.html#model res_numbering] model attribute. Example: **setattr !#1 structure  res_numbering uniprot**
 
 February 2, 2022: ** Read ZDOCK output** - [https://zdock.umassmed.edu/ ZDOCK] quasi-PDB files can be [https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/open.html opened] with the **format zdock** option