Changes between Version 129 and Version 130 of ChangeLog


Ignore:
Timestamp:
May 23, 2019, 12:32:44 PM (6 years ago)
Author:
Elaine Meng
Comment:

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  • ChangeLog

    v129 v130  
    77May 22, 2019: **Release 0.9 release candidate**
    88
    9 May 8, 2019: ** Fetch !UniProt sequence ** - The ''open'' command can be used to fetch and display a !UniProt sequence by prefixing the !UniProt accession code or identifier with "uniprot:" or by adding the "fromDatabase uniprot" arguments to the command (''e.g.'' "open uniprot:NGF_HUMAN" or "open P01138 from uniprot").
     9May 17, 2019: **control sequence-structure association** - dialog and ''sequence'' command options to manually control sequence-structure association
     10
     11May 15, 2019: **BLAST query from sequence alignment** - the ''blastprotein'' command can use a sequence (regardless of whether a structure is open) as the query; previously only the sequences of open structures could be used
     12
     13May 8, 2019: ** Fetch !UniProt sequence ** - the ''open'' command can be used to fetch a !UniProt sequence by prefixing the !UniProt accession code or identifier with "uniprot:" or by adding the "fromDatabase uniprot" arguments to the command (''e.g.'' "open uniprot:NGF_HUMAN" or "open P01138 from uniprot")
    1014
    1115May 2, 2019: ** View Autodock Vina docking results ** - the **ViewDockX** tool can be used with pdbqt output from Autodock Vina
    … …  
    1317April 29, 2019: **Tabbed toolbar** - existing icon toolbars combined into a new tabbed interface; icon improvements underway
    1418
    15 April 25, 2019: **Settings code change ** - some settings code got moved from the ChimeraX core into appropriate tool bundles.  For settings that moved, they will revert to their initial default values.  Older builds will still have the old values however, so previous settings values can be determined by running such a build.  This may be particularly relevant for the "startup commands" setting, which may have extensive associated text.  The settings categories that moved are: Clipping, Distances
    16 Labels, Log, Startup, Trackpad, and Window.
     19April 25, 2019: **Settings code change ** - some settings code got moved from the ChimeraX core into appropriate tool bundles.  Settings that moved (Clipping, Distances
     20Labels, Log, Startup, Trackpad, and Window) will revert to their initial default values. However, for recovery purposes (copying into new version), the previous values can still be seen by running an older build. This may be particularly helpful for the startup commands.
    1721
    1822April 22, 2019: ** View GOLD docking results ** - the **ViewDockX** tool can be used with Mol2 output from GOLD
    … …  
    4246January 7, 2019: ** DICOM reader ** - initial version (will continue to improve) for importing medical imaging datasets
    4347
    44 December 14, 2018: ** Chain table revamp ** - the table chains shown when opening a structure has been mildly revamped so that links in the lefthand column select the corresponding chains whereas those in the righthand column show the chain sequence (the latter behavior is the same as before)
     48December 14, 2018: ** Chain table revamp ** - in the table of chains shown in the Log when a structure is opened, links in the lefthand column select the corresponding chains (those in the righthand column still show the chain sequence, as before)
    4549
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